Lineage for d1dgsb1 (1dgs B:2401-2581)

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2324209Fold a.60: SAM domain-like [47768] (16 superfamilies)
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. 2324407Superfamily a.60.2: RuvA domain 2-like [47781] (7 families) (S)
    duplication: contains two helix-hairpin-helix (HhH) motifs
  5. 2324432Family a.60.2.2: NAD+-dependent DNA ligase, domain 3 [47786] (1 protein)
  6. 2324433Protein NAD+-dependent DNA ligase, domain 3 [47787] (1 species)
    duplication: consists of two RuvA-like domains (four HhH motifs); also contains a zinc-finger subdomain
  7. 2324434Species Thermus filiformis [TaxId:276] [47788] (3 PDB entries)
  8. 2324436Domain d1dgsb1: 1dgs B:2401-2581 [17964]
    Other proteins in same PDB: d1dgsa2, d1dgsa3, d1dgsb2, d1dgsb3
    protein/DNA complex; complexed with amp, zn

Details for d1dgsb1

PDB Entry: 1dgs (more details), 2.9 Å

PDB Description: crystal structure of nad+-dependent dna ligase from t. filiformis
PDB Compounds: (B:) DNA ligase

SCOPe Domain Sequences for d1dgsb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1dgsb1 a.60.2.2 (B:2401-2581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}

SCOPe Domain Coordinates for d1dgsb1:

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Timeline for d1dgsb1: