SCOPe 2.08: Domain d1c0ma1: 1c0m A:217-269

Lineage for d1c0ma1 (1c0m A:217-269)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.34: SH3-like barrel [50036] (21 superfamilies)
   barrel, partly opened; n*=4, S*=8; meander
   the last strand is interrupted by a turn of 3-10 helix

4. Superfamily b.34.7: DNA-binding domain of retroviral integrase [50122] (2 families)

5. Family b.34.7.1: DNA-binding domain of retroviral integrase [50123] (1 protein)
   Pfam PF00552, Pfam PF18103

6. Protein DNA-binding domain of retroviral integrase [50124] (4 species)

7. Species Rous sarcoma virus RSV [TaxId:11886] [50126] (2 PDB entries)

8. Domain d1c0ma1: 1c0m A:217-269 [24635]
   Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2

Details for d1c0ma1

PDB Entry: 1c0m, 2.53 Å

PDB Description: crystal structure of rsv two-domain integrase

PDB Compounds: (A:) protein (integrase)

SCOPe Domain Sequences for d1c0ma1:

Sequence; same for both SEQRES and ATOM records:

>d1c0ma1 b.34.7.1 (A:217-269) DNA-binding domain of retroviral integrase {Rous sarcoma virus RSV [TaxId: 11886]}
vltegppvkirietgewekgwnvlvwgrgyaavknrdtdkviwvpsrkvkpdi

Timeline for d1c0ma1:

• d1c0ma1 first appeared (with stable ids) in SCOP 1.55
  
• d1c0ma1 appears in SCOPe 2.07