Lineage for Protein: DNA-binding domain of retroviral integrase

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2782725Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2784433Superfamily b.34.7: DNA-binding domain of retroviral integrase [50122] (2 families) (S)
  5. 2784434Family b.34.7.1: DNA-binding domain of retroviral integrase [50123] (1 protein)
    Pfam PF00552, Pfam PF18103
  6. 2784435Protein DNA-binding domain of retroviral integrase [50124] (4 species)

Species:

  1. 2784436Human immunodeficiency virus type 1 [TaxId:11676] [50125] (8 PDB entries)
    1. Domains for 1ex4:
      1. 2784444Domain d1ex4a1: 1ex4 A:223-270 [24627]
        Other proteins in same PDB: d1ex4a2, d1ex4b2
        complexed with cps
      2. 2784445Domain d1ex4b1: 1ex4 B:223-270 [24628]
        Other proteins in same PDB: d1ex4a2, d1ex4b2
        complexed with cps
    2. Domains for 1ihv:
      1. 2784450Domain d1ihva_: 1ihv A: [24629]
      2. 2784451Domain d1ihvb_: 1ihv B: [24630]
    3. Domains for 1ihw:
      1. 2784448Domain d1ihwa_: 1ihw A: [24631]
      2. 2784449Domain d1ihwb_: 1ihw B: [24632]
    4. Domains for 1qmc:
      1. 2784446Domain d1qmca1: 1qmc A:220-270 [24633]
        Other proteins in same PDB: d1qmca2, d1qmcb2
      2. 2784447Domain d1qmcb1: 1qmc B:220-270 [24634]
        Other proteins in same PDB: d1qmca2, d1qmcb2
    5. Domains for 5tc2:
      1. 2784441Domain d5tc2a_: 5tc2 A: [347601]
        automated match to d1c6vx_
        complexed with gol
      2. 2784442Domain d5tc2b_: 5tc2 B: [347682]
        automated match to d1c6vx_
        complexed with gol
    6. Domain for 6t6e:
    7. Domain for 6t6i:
    8. Domains for 6t6j:
      1. 2784438Domain d6t6ja1: 6t6j A:219-270 [391834]
        Other proteins in same PDB: d6t6ja2, d6t6jb2, d6t6jc2
        automated match to d1c6vx_
        complexed with ni; mutant
      2. 2784439Domain d6t6jb1: 6t6j B:219-270 [391820]
        Other proteins in same PDB: d6t6ja2, d6t6jb2, d6t6jc2
        automated match to d1c6vx_
        complexed with ni; mutant
      3. 2784440Domain d6t6jc1: 6t6j C:219-270 [391837]
        Other proteins in same PDB: d6t6ja2, d6t6jb2, d6t6jc2
        automated match to d1c6vx_
        complexed with ni; mutant
  2. 2784452Human spumaretrovirus [TaxID:11963] [419616] (6 PDB entries)
    1. Domain for 3l2q:
    2. Domain for 3l2s:
    3. Domain for 3l2u:
    4. Domain for 3s3n:
    5. Domain for 3s3o:
    6. Domain for 4ztj:
  3. 2784459Rous sarcoma virus RSV [TaxId:11886] [50126] (2 PDB entries)
    1. Domains for 1c0m:
      1. 2784460Domain d1c0ma1: 1c0m A:217-269 [24635]
        Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
      2. 2784461Domain d1c0mb1: 1c0m B:217-269 [24636]
        Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
      3. 2784462Domain d1c0mc1: 1c0m C:217-270 [24637]
        Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
      4. 2784463Domain d1c0md1: 1c0m D:217-269 [24638]
        Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
    2. Domains for 1c1a:
      1. 2784464Domain d1c1aa1: 1c1a A:217-272 [24639]
        Other proteins in same PDB: d1c1aa2, d1c1ab2
      2. 2784465Domain d1c1ab1: 1c1a B:217-268 [24640]
        Other proteins in same PDB: d1c1aa2, d1c1ab2
  4. 2784466Simian immunodeficiency virus [TaxId:11723] [50127] (4 PDB entries)
    1. Domain for 1c6v:
    2. Domains for 6rwm:
      1. 2784467Domain d6rwmd2: 6rwm D:223-272 [380199]
        Other proteins in same PDB: d6rwmc1, d6rwmc2, d6rwmd1, d6rwme1, d6rwme2, d6rwmk1, d6rwmk2, d6rwml1, d6rwmm1, d6rwmm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn
      2. 2784468Domain d6rwmf1: 6rwm F:223-271 [380224]
        Other proteins in same PDB: d6rwmc1, d6rwmc2, d6rwmd1, d6rwme1, d6rwme2, d6rwmk1, d6rwmk2, d6rwml1, d6rwmm1, d6rwmm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn
      3. 2784469Domain d6rwml2: 6rwm L:223-272 [380239]
        Other proteins in same PDB: d6rwmc1, d6rwmc2, d6rwmd1, d6rwme1, d6rwme2, d6rwmk1, d6rwmk2, d6rwml1, d6rwmm1, d6rwmm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn
      4. 2784470Domain d6rwmn1: 6rwm N:223-271 [380190]
        Other proteins in same PDB: d6rwmc1, d6rwmc2, d6rwmd1, d6rwme1, d6rwme2, d6rwmk1, d6rwmk2, d6rwml1, d6rwmm1, d6rwmm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn
    3. Domains for 6rwn:
      1. 2784475Domain d6rwnd2: 6rwn D:223-272 [380197]
        Other proteins in same PDB: d6rwnc1, d6rwnc2, d6rwnd1, d6rwne1, d6rwne2, d6rwnk1, d6rwnk2, d6rwnl1, d6rwnm1, d6rwnm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, dlu, mg, zn
      2. 2784476Domain d6rwnf1: 6rwn F:223-271 [380236]
        Other proteins in same PDB: d6rwnc1, d6rwnc2, d6rwnd1, d6rwne1, d6rwne2, d6rwnk1, d6rwnk2, d6rwnl1, d6rwnm1, d6rwnm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, dlu, mg, zn
      3. 2784477Domain d6rwnl2: 6rwn L:223-272 [380221]
        Other proteins in same PDB: d6rwnc1, d6rwnc2, d6rwnd1, d6rwne1, d6rwne2, d6rwnk1, d6rwnk2, d6rwnl1, d6rwnm1, d6rwnm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, dlu, mg, zn
      4. 2784478Domain d6rwnn1: 6rwn N:223-271 [380214]
        Other proteins in same PDB: d6rwnc1, d6rwnc2, d6rwnd1, d6rwne1, d6rwne2, d6rwnk1, d6rwnk2, d6rwnl1, d6rwnm1, d6rwnm2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, dlu, mg, zn
    4. Domains for 6rwo:
      1. 2784471Domain d6rwod2: 6rwo D:223-272 [380178]
        Other proteins in same PDB: d6rwoc1, d6rwoc2, d6rwod1, d6rwoe1, d6rwoe2, d6rwok1, d6rwok2, d6rwol1, d6rwom1, d6rwom2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn
      2. 2784472Domain d6rwof1: 6rwo F:223-271 [380164]
        Other proteins in same PDB: d6rwoc1, d6rwoc2, d6rwod1, d6rwoe1, d6rwoe2, d6rwok1, d6rwok2, d6rwol1, d6rwom1, d6rwom2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn
      3. 2784473Domain d6rwol2: 6rwo L:223-272 [380235]
        Other proteins in same PDB: d6rwoc1, d6rwoc2, d6rwod1, d6rwoe1, d6rwoe2, d6rwok1, d6rwok2, d6rwol1, d6rwom1, d6rwom2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn
      4. 2784474Domain d6rwon1: 6rwo N:223-271 [380157]
        Other proteins in same PDB: d6rwoc1, d6rwoc2, d6rwod1, d6rwoe1, d6rwoe2, d6rwok1, d6rwok2, d6rwol1, d6rwom1, d6rwom2
        automated match to d1ex4a1
        protein/DNA complex; complexed with cl, klq, mg, zn

More info for Protein DNA-binding domain of retroviral integrase from b.34.7.1: DNA-binding domain of retroviral integrase

Timeline for Protein DNA-binding domain of retroviral integrase from b.34.7.1: DNA-binding domain of retroviral integrase: