Lineage for Protein: DNA-binding domain of retroviral integrase

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2376890Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2378383Superfamily b.34.7: DNA-binding domain of retroviral integrase [50122] (2 families) (S)
  5. 2378384Family b.34.7.1: DNA-binding domain of retroviral integrase [50123] (2 protein domains)
  6. 2378385Protein DNA-binding domain of retroviral integrase [50124] (3 species)

Species:

  1. 2378386Human immunodeficiency virus type 1 [TaxId:11676] [50125] (4 PDB entries)
    1. Domains for 1ex4:
      1. 2378387Domain d1ex4a1: 1ex4 A:223-270 [24627]
        Other proteins in same PDB: d1ex4a2, d1ex4b2
        complexed with cps
      2. 2378388Domain d1ex4b1: 1ex4 B:223-270 [24628]
        Other proteins in same PDB: d1ex4a2, d1ex4b2
        complexed with cps
    2. Domains for 1ihv:
      1. 2378393Domain d1ihva_: 1ihv A: [24629]
      2. 2378394Domain d1ihvb_: 1ihv B: [24630]
    3. Domains for 1ihw:
      1. 2378391Domain d1ihwa_: 1ihw A: [24631]
      2. 2378392Domain d1ihwb_: 1ihw B: [24632]
    4. Domains for 1qmc:
      1. 2378389Domain d1qmca1: 1qmc A:220-270 [24633]
        Other proteins in same PDB: d1qmca2, d1qmcb2
      2. 2378390Domain d1qmcb1: 1qmc B:220-270 [24634]
        Other proteins in same PDB: d1qmca2, d1qmcb2
  2. 2378395Rous sarcoma virus RSV [TaxId:11886] [50126] (2 PDB entries)
    1. Domains for 1c0m:
      1. 2378396Domain d1c0ma1: 1c0m A:217-269 [24635]
        Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
      2. 2378397Domain d1c0mb1: 1c0m B:217-269 [24636]
        Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
      3. 2378398Domain d1c0mc1: 1c0m C:217-270 [24637]
        Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
      4. 2378399Domain d1c0md1: 1c0m D:217-269 [24638]
        Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
    2. Domains for 1c1a:
      1. 2378400Domain d1c1aa1: 1c1a A:217-272 [24639]
        Other proteins in same PDB: d1c1aa2, d1c1ab2
      2. 2378401Domain d1c1ab1: 1c1a B:217-268 [24640]
        Other proteins in same PDB: d1c1aa2, d1c1ab2
  3. 2378402Simian immunodeficiency virus [TaxId:11723] [50127] (1 PDB entry)

More info for Protein DNA-binding domain of retroviral integrase from b.34.7.1: DNA-binding domain of retroviral integrase

Timeline for Protein DNA-binding domain of retroviral integrase from b.34.7.1: DNA-binding domain of retroviral integrase: