Lineage for Protein: DNA-binding domain of retroviral integrase

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2045654Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2047065Superfamily b.34.7: DNA-binding domain of retroviral integrase [50122] (2 families) (S)
  5. 2047066Family b.34.7.1: DNA-binding domain of retroviral integrase [50123] (1 protein)
  6. 2047067Protein DNA-binding domain of retroviral integrase [50124] (3 species)

Species:

  1. 2047068Human immunodeficiency virus type 1 [TaxId:11676] [50125] (4 PDB entries)
    1. Domains for 1ex4:
      1. 2047069Domain d1ex4a1: 1ex4 A:223-270 [24627]
        Other proteins in same PDB: d1ex4a2, d1ex4b2
        complexed with cps
      2. 2047070Domain d1ex4b1: 1ex4 B:223-270 [24628]
        Other proteins in same PDB: d1ex4a2, d1ex4b2
        complexed with cps
    2. Domains for 1ihv:
      1. 2047075Domain d1ihva_: 1ihv A: [24629]
      2. 2047076Domain d1ihvb_: 1ihv B: [24630]
    3. Domains for 1ihw:
      1. 2047073Domain d1ihwa_: 1ihw A: [24631]
      2. 2047074Domain d1ihwb_: 1ihw B: [24632]
    4. Domains for 1qmc:
      1. 2047071Domain d1qmca1: 1qmc A:220-270 [24633]
        Other proteins in same PDB: d1qmca2, d1qmcb2
      2. 2047072Domain d1qmcb1: 1qmc B:220-270 [24634]
        Other proteins in same PDB: d1qmca2, d1qmcb2
  2. 2047077Rous sarcoma virus RSV [TaxId:11886] [50126] (2 PDB entries)
    1. Domains for 1c0m:
      1. 2047078Domain d1c0ma1: 1c0m A:217-269 [24635]
        Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
      2. 2047079Domain d1c0mb1: 1c0m B:217-269 [24636]
        Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
      3. 2047080Domain d1c0mc1: 1c0m C:217-270 [24637]
        Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
      4. 2047081Domain d1c0md1: 1c0m D:217-269 [24638]
        Other proteins in same PDB: d1c0ma2, d1c0mb2, d1c0mc2, d1c0md2
    2. Domains for 1c1a:
      1. 2047082Domain d1c1aa1: 1c1a A:217-272 [24639]
        Other proteins in same PDB: d1c1aa2, d1c1ab2
      2. 2047083Domain d1c1ab1: 1c1a B:217-268 [24640]
        Other proteins in same PDB: d1c1aa2, d1c1ab2
  3. 2047084Simian immunodeficiency virus [TaxId:11723] [50127] (1 PDB entry)

More info for Protein DNA-binding domain of retroviral integrase from b.34.7.1: DNA-binding domain of retroviral integrase

Timeline for Protein DNA-binding domain of retroviral integrase from b.34.7.1: DNA-binding domain of retroviral integrase: