Lineage for d3rjfa2 (3rjf A:92-148)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1998615Fold a.60: SAM domain-like [47768] (16 superfamilies)
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. 1999483Superfamily a.60.12: PsbU/PolX domain-like [81585] (3 families) (S)
    contains one classic and one pseudo HhH motifs
  5. 1999484Family a.60.12.1: DNA polymerase beta-like, second domain [81584] (3 protein domains)
    topological similarity to the N-terminal domain
    automatically mapped to Pfam PF10391
  6. 1999485Protein DNA polymerase beta [81579] (2 species)
  7. 1999486Species Human (Homo sapiens) [TaxId:9606] [81575] (145 PDB entries)
  8. 1999524Domain d3rjfa2: 3rjf A:92-148 [215872]
    Other proteins in same PDB: d3rjfa1, d3rjfa3
    automated match to d1tv9a2
    protein/DNA complex; complexed with cl, f2a, mg, na

Details for d3rjfa2

PDB Entry: 3rjf (more details), 2.3 Å

PDB Description: Ternary complex of DNA Polymerase Beta with a gapped DNA containing (syn)8odG at template position paired with non-hydrolyzable dATP analog (dApCPP)
PDB Compounds: (A:) DNA polymerase beta

SCOPe Domain Sequences for d3rjfa2:

Sequence; same for both SEQRES and ATOM records: (download)

>d3rjfa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}

SCOPe Domain Coordinates for d3rjfa2:

Click to download the PDB-style file with coordinates for d3rjfa2.
(The format of our PDB-style files is described here.)

Timeline for d3rjfa2: