Lineage for Protein: DNA polymerase beta

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1998615Fold a.60: SAM domain-like [47768] (16 superfamilies)
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. 1999483Superfamily a.60.12: PsbU/PolX domain-like [81585] (3 families) (S)
    contains one classic and one pseudo HhH motifs
  5. 1999484Family a.60.12.1: DNA polymerase beta-like, second domain [81584] (3 protein domains)
    topological similarity to the N-terminal domain
    automatically mapped to Pfam PF10391
  6. 1999485Protein DNA polymerase beta [81579] (2 species)

Species:

  1. 1999486Human (Homo sapiens) [TaxId:9606] [81575] (145 PDB entries)
    1. Domain for 1bpx:
    2. Domain for 1bpy:
    3. Domain for 1bpz:
    4. Domain for 1mq2:
    5. Domain for 1mq3:
    6. Domain for 1tv9:
    7. Domain for 1tva:
    8. Domain for 1zjm:
    9. Domain for 1zjn:
    10. Domain for 1zqa:
    11. Domain for 1zqb:
    12. Domain for 1zqc:
    13. Domain for 1zqd:
    14. Domain for 1zqe:
    15. Domain for 1zqf:
    16. Domain for 1zqg:
    17. Domain for 1zqh:
    18. Domain for 1zqi:
    19. Domain for 1zqj:
    20. Domain for 1zqk:
    21. Domain for 1zql:
    22. Domain for 1zqm:
    23. Domain for 1zqn:
    24. Domain for 1zqo:
    25. Domain for 1zqp:
    26. Domain for 1zqq:
    27. Domain for 1zqr:
    28. Domain for 1zqs:
    29. Domain for 1zqt:
    30. Domain for 2fmp:
    31. Domain for 2fmq:
    32. Domain for 2fms:
    33. Domain for 2i9g:
    34. Domain for 2iso:
    35. Domain for 2isp:
    36. Domain for 2p66:
    37. Domain for 2pxi:
    38. Domain for 3c2k:
    39. Domain for 3c2l:
    40. Domain for 3c2m:
    41. Domain for 3gdx:
    42. Domain for 3mby:
    43. Domain for 3rh4:
    44. Domain for 3rh5:
    45. Domain for 3rh6:
    46. Domain for 3rje:
    47. Domain for 3rjf:
    48. Domain for 3rjg:
    49. Domain for 3rjh:
    50. Domain for 3rji:
    51. Domain for 3rjj:
    52. Domain for 3rjk:
    53. Domain for 3tfr:
    54. Domain for 3tfs:
    55. Domain for 4jwm:
    56. Domain for 4kld:
    57. Domain for 4kle:
    58. Domain for 4klf:
    59. Domain for 4klg:
    60. Domain for 4klh:
    61. Domain for 4kli:
    62. Domain for 4klj:
    63. Domain for 4kll:
    64. Domain for 4klm:
    65. Domain for 4klo:
    66. Domain for 4klp:
    67. Domain for 4klq:
    68. Domain for 4kls:
    69. Domain for 4klt:
    70. Domain for 4klu:
    71. Domain for 4nlk:
    72. Domain for 4nln:
    73. Domain for 4nlz:
    74. Domain for 4nm1:
    75. Domain for 4nm2:
    76. Domain for 4nxz:
    77. Domain for 4ny8:
    78. Domain for 4ppx:
    79. Domain for 7ice:
    80. Domain for 7icf:
    81. Domain for 7icg:
    82. Domain for 7ich:
    83. Domain for 7ici:
    84. Domain for 7icj:
    85. Domain for 7ick:
    86. Domain for 7icl:
    87. Domain for 7icm:
    88. Domain for 7icn:
    89. Domain for 7ico:
    90. Domain for 7icp:
    91. Domain for 7icq:
    92. Domain for 7icr:
    93. Domain for 7ics:
    94. Domain for 7ict:
    95. Domain for 7icu:
    96. Domain for 7icv:
    97. Domain for 8ica:
    98. Domain for 8icb:
    99. Domain for 8icc:
    100. Domain for 8ice:
    101. Domain for 8icf:
    102. Domain for 8icg:
    103. Domain for 8ich:
    104. Domain for 8ici:
    105. Domain for 8icj:
    106. Domain for 8ick:
    107. Domain for 8icl:
    108. Domain for 8icm:
    109. Domain for 8icn:
    110. Domain for 8ico:
    111. Domain for 8icp:
    112. Domain for 8icq:
    113. Domain for 8icr:
    114. Domain for 8ics:
    115. Domain for 8ict:
    116. Domain for 8icu:
    117. Domain for 8icv:
    118. Domain for 8icw:
    119. Domain for 8icx:
    120. Domain for 8icy:
    121. Domain for 8icz:
    122. Domain for 9ica:
    123. Domain for 9icb:
    124. Domain for 9icc:
    125. Domain for 9ice:
    126. Domain for 9icf:
    127. Domain for 9icg:
    128. Domain for 9ich:
    129. Domain for 9ici:
    130. Domain for 9icj:
    131. Domain for 9ick:
    132. Domain for 9icl:
    133. Domain for 9icm:
    134. Domain for 9icn:
    135. Domain for 9ico:
    136. Domain for 9icp:
    137. Domain for 9icq:
    138. Domain for 9icr:
    139. Domain for 9ics:
    140. Domain for 9ict:
    141. Domain for 9icu:
    142. Domain for 9icv:
    143. Domain for 9icw:
    144. Domain for 9icx:
    145. Domain for 9icy:
  2. 1999632Norway rat (Rattus norvegicus) [TaxId:10116] [81577] (23 PDB entries)
    1. Domain for 1bpb:
    2. Domain for 1bpd:
    3. Domain for 1bpe:
    4. Domains for 1huo:
      1. 1999645Domain d1huoa3: 1huo A:92-148 [75846]
        Other proteins in same PDB: d1huoa1, d1huoa4, d1huob1, d1huob4
        protein/DNA complex; complexed with cr, tte
      2. 1999646Domain d1huob3: 1huo B:92-148 [75848]
        Other proteins in same PDB: d1huoa1, d1huoa4, d1huob1, d1huob4
        protein/DNA complex; complexed with cr, tte
    5. Domains for 1huz:
      1. 1999643Domain d1huza3: 1huz A:92-148 [75850]
        Other proteins in same PDB: d1huza1, d1huza4, d1huzb1, d1huzb4
        protein/DNA complex; complexed with cr, mdn
      2. 1999644Domain d1huzb3: 1huz B:92-148 [75852]
        Other proteins in same PDB: d1huza1, d1huza4, d1huzb1, d1huzb4
        protein/DNA complex; complexed with cr, mdn
    6. Domain for 1jn3:
    7. Domain for 1nom:
    8. Domain for 1rpl:
    9. Domain for 1zqu:
    10. Domain for 1zqv:
    11. Domain for 1zqw:
    12. Domain for 1zqx:
    13. Domain for 1zqy:
    14. Domain for 1zqz:
    15. Domain for 2bpc:
    16. Domain for 2bpf:
    17. Domains for 2bpg:
      1. 1999659Domain d2bpga3: 2bpg A:92-148 [75993]
        Other proteins in same PDB: d2bpga1, d2bpga4, d2bpgb1, d2bpgb4
        protein/DNA complex; complexed with dct, mg
      2. 1999660Domain d2bpgb3: 2bpg B:92-148 [75995]
        Other proteins in same PDB: d2bpga1, d2bpga4, d2bpgb1, d2bpgb4
        protein/DNA complex; complexed with dct, mg
    18. Domains for 3k75:
      1. 1999654Domain d3k75d1: 3k75 D:91-148 [232673]
        Other proteins in same PDB: d3k75b_, d3k75c_, d3k75d2, d3k75d3, d3k75e2
        automated match to d2vana1
      2. 1999655Domain d3k75e1: 3k75 E:93-148 [232674]
        Other proteins in same PDB: d3k75b_, d3k75c_, d3k75d2, d3k75d3, d3k75e2
        automated match to d2vana1
    19. Domains for 3uxn:
      1. 1999648Domain d3uxna2: 3uxn A:92-148 [217565]
        Other proteins in same PDB: d3uxna1, d3uxna3, d3uxnb1, d3uxnb3
        automated match to d1huza3
      2. 1999649Domain d3uxnb2: 3uxn B:92-148 [217568]
        Other proteins in same PDB: d3uxna1, d3uxna3, d3uxnb1, d3uxnb3
        automated match to d1huza3
    20. Domains for 3uxo:
      1. 1999635Domain d3uxoa2: 3uxo A:92-148 [250278]
        Other proteins in same PDB: d3uxoa1, d3uxoa3, d3uxob1, d3uxob3
        automated match to d4klia2
      2. 1999636Domain d3uxob2: 3uxo B:92-148 [250281]
        Other proteins in same PDB: d3uxoa1, d3uxoa3, d3uxob1, d3uxob3
        automated match to d4klia2
    21. Domain for 3v7j:
    22. Domain for 3v7k:
    23. Domain for 3v7l:

More info for Protein DNA polymerase beta from a.60.12.1: DNA polymerase beta-like, second domain

Timeline for Protein DNA polymerase beta from a.60.12.1: DNA polymerase beta-like, second domain: