SCOPe 2.07: Domain d3k5ob2: 3k5o B:390-783

Lineage for d3k5ob2 (3k5o B:390-783)

1. Root: SCOPe 2.07

2. Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (5 proteins)

6. Protein automated matches [226972] (9 species)
   not a true protein

7. Species Escherichia coli K-12 [TaxId:83333] [225830] (1 PDB entry)

8. Domain d3k5ob2: 3k5o B:390-783 [212173]
   Other proteins in same PDB: d3k5oa1, d3k5ob1
   automated match to d1q8ia2

Details for d3k5ob2

PDB Entry: 3k5o, 2.2 Å

PDB Description: crystal structure of e.coli pol ii

PDB Compounds: (B:) DNA polymerase II

SCOPe Domain Sequences for d3k5ob2:

Sequence, based on SEQRES records:

>d3k5ob2 e.8.1.1 (B:390-783) automated matches {Escherichia coli K-12 [TaxId: 83333]}
nlgevpphaspggyvmdsrpglydsvlvldykslypsiirtflidpvglvegmaqpdpeh
stegfldawfsrekhclpeivtniwhgrdeakrqgnkplsqalkiimnafygvlgttacr
ffdprlassitmrghqimrqtkalieaqgydviygdtdstfvwlkgahseeeaakigral
vqhvnawwaetlqkqrltsaleleyethfcrflmptirgadtgskkryagliqegdkqrm
vfkgletvrtdwtplaqqfqqelylrifrnepyqeyvretidklmageldarlvyrkrlr
rplseyqrnvpphvraarladeenqkrgrplqyqnrgtikyvwttngpepldyqrspldy
ehyltrqlqpvaegilpfiednfatlmtgqlglf

Sequence, based on observed residues (ATOM records):

>d3k5ob2 e.8.1.1 (B:390-783) automated matches {Escherichia coli K-12 [TaxId: 83333]}
nlgevpphaspggyvmdsrpglydsvlvldykslypsiirtflidpvglvegmaqpdpeh
stegfldawfsrekhclpeivtniwhgrdeakrqgnkplsqalkiimnafygvlgttacr
ffdprlassitmrghqimrqtkalieaqgydviygdtdstfvwlkgahseeeaakigral
vqhvnawwaetlqkqrltsaleleyethfcrflmptiyagliqegdkqrmvfkwtplaqq
fqqelylrifrnepyqeyvretidklmageldarlvyrkrlrrplseyqrnvpphvraar
ladeerpyqtikyvwttngpepldyqrspldyehyltrqlqpvaegilpfiednfatlmt
gqlglf

Timeline for d3k5ob2:

• d3k5ob2 first appeared in SCOPe 2.03
  
• d3k5ob2 appears in SCOPe 2.06
  
• d3k5ob2 appears in the current release, SCOPe 2.08