SCOPe 2.07: Domain d3k5oa1: 3k5o A:2-389

Lineage for d3k5oa1 (3k5o A:2-389)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (16 families)
   consists of one domain of this fold

5. Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 proteins)
   contains Pfam PF00929

6. Protein automated matches [190162] (6 species)
   not a true protein

7. Species Escherichia coli K-12 [TaxId:83333] [225829] (2 PDB entries)

8. Domain d3k5oa1: 3k5o A:2-389 [212170]
   Other proteins in same PDB: d3k5oa2, d3k5ob2
   automated match to d1q8ia1

Details for d3k5oa1

PDB Entry: 3k5o, 2.2 Å

PDB Description: crystal structure of e.coli pol ii

PDB Compounds: (A:) DNA polymerase II

SCOPe Domain Sequences for d3k5oa1:

Sequence, based on SEQRES records:

>d3k5oa1 c.55.3.5 (A:2-389) automated matches {Escherichia coli K-12 [TaxId: 83333]}
aqagfiltrhwrdtpqgtevsfwlatdngplqvtlapqesvafipadqvpraqhilqgeq
gfrltplalkdfhrqpvyglycrahrqlmnyekrlreggvtvyeadvrpperylmerfit
spvwvegdmhngtivnarlkphpdyrpplkwvsidiettrhgelyciglegcgqrivyml
gpengdassldfeleyvasrpqlleklnawfanydpdviigwnvvqfdlrmlqkhaeryr
lplrlgrdnselewrehgfkngvffaqakgrliidgiealksafwnfssfsletvaqell
gegksidnpwdrmdeidrrfaedkpalatynlkncelvtqifhkteimpflleratvngl
pvdrhggsvaafghlyfprmhragyvap

Sequence, based on observed residues (ATOM records):

>d3k5oa1 c.55.3.5 (A:2-389) automated matches {Escherichia coli K-12 [TaxId: 83333]}
aqagfiltrhwrdtpqgtevsfwlatdngplqvtlapqesvafipadqvpraqhilqgeq
gfrltplalkdfhrqpvyglycrahrqlmnyekrlreggvtvyeadvrpperylmerfit
spvwvegdmhngtivnarlkphpdyrpplkwvsidiettrhgelyciglegcgqrivyml
gpengdassldfeleyvasrpqlleklnawfanydpdviigwnvvqfdlrmlqkhaeryr
lplrlgrdnselewrfaqakgrliidgiealksafwnfssfsletvaqellgenpwdrmd
eidrrfaedkpalatynlkncelvtqifhkteimpflleratvnglpvdrhggsvaafgh
lyfprmhragyvap

Timeline for d3k5oa1:

• d3k5oa1 first appeared in SCOPe 2.03
  
• d3k5oa1 appears in SCOPe 2.06
  
• d3k5oa1 appears in the current release, SCOPe 2.08