Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2491249Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2493668Superfamily c.55.3: Ribonuclease H-like [53098] (16 families) (S)
    consists of one domain of this fold
  5. 2494311Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 proteins)
    contains Pfam PF00929
  6. 2494696Protein automated matches [190162] (6 species)
    not a true protein

Species:

  1. 2494697Colwellia psychrerythraea [TaxId:167879] [365713] (3 PDB entries)
    1. Domain for 6a4a:
    2. Domains for 6a4d:
      1. 2494698Domain d6a4da1: 6a4d A:1-181 [365834]
        Other proteins in same PDB: d6a4da2, d6a4db2
        automated match to d2igia_
        complexed with 9rc
      2. 2494699Domain d6a4db1: 6a4d B:1-181 [365911]
        Other proteins in same PDB: d6a4da2, d6a4db2
        automated match to d2igia_
        complexed with 9rc
    3. Domains for 6a4f:
      1. 2494700Domain d6a4fa1: 6a4f A:1-181 [365915]
        Other proteins in same PDB: d6a4fa2, d6a4fb2
        automated match to d2igia_
        complexed with mn, u5p
      2. 2494701Domain d6a4fb1: 6a4f B:1-181 [365714]
        Other proteins in same PDB: d6a4fa2, d6a4fb2
        automated match to d2igia_
        complexed with mn, u5p
  2. 2494703Coxiella burnetii [TaxId:777] [196134] (1 PDB entry)
  3. 2494706Escherichia coli K-12 [TaxId:83333] [225829] (2 PDB entries)
    1. Domains for 2is3:
      1. 2494709Domain d2is3a_: 2is3 A: [242171]
        automated match to d2f96a1
        complexed with so4
      2. 2494710Domain d2is3b_: 2is3 B: [242172]
        automated match to d2f96a1
        complexed with so4
      3. 2494711Domain d2is3c_: 2is3 C: [242173]
        automated match to d2f96a1
        complexed with so4
      4. 2494712Domain d2is3d_: 2is3 D: [242174]
        automated match to d2f96a1
        complexed with so4
    2. Domains for 3k5o:
      1. 2494707Domain d3k5oa1: 3k5o A:2-389 [212170]
        Other proteins in same PDB: d3k5oa2, d3k5ob2
        automated match to d1q8ia1
      2. 2494708Domain d3k5ob1: 3k5o B:2-389 [212172]
        Other proteins in same PDB: d3k5oa2, d3k5ob2
        automated match to d1q8ia1
  4. 2494713Escherichia coli [TaxId:562] [187263] (14 PDB entries)
    1. Domain for 2gui:
    2. Domains for 2ido:
      1. 2494716Domain d2idoa_: 2ido A: [137284]
        Other proteins in same PDB: d2idob_, d2idod_
        automated match to d1j53a_
        complexed with edo, mn, tmp
      2. 2494717Domain d2idoc_: 2ido C: [137286]
        Other proteins in same PDB: d2idob_, d2idod_
        automated match to d1j53a_
        complexed with edo, mn, tmp
    3. Domain for 2xy8:
    4. Domain for 3c94:
    5. Domain for 3c95:
    6. Domain for 3k5l:
    7. Domain for 3k5m:
    8. Domains for 3k5n:
      1. 2494738Domain d3k5na1: 3k5n A:1-389 [247113]
        Other proteins in same PDB: d3k5na2, d3k5nb2, d3k5nb3
        automated match to d1q8ia1
        protein/DNA complex
      2. 2494739Domain d3k5nb1: 3k5n B:1-389 [247115]
        Other proteins in same PDB: d3k5na2, d3k5nb2, d3k5nb3
        automated match to d1q8ia1
        protein/DNA complex
    9. Domains for 3ngy:
      1. 2494719Domain d3ngya_: 3ngy A: [247917]
        automated match to d2f96a1
        complexed with co; mutant
      2. 2494720Domain d3ngyb_: 3ngy B: [247918]
        automated match to d2f96a1
        complexed with co; mutant
      3. 2494721Domain d3ngyc_: 3ngy C: [247919]
        automated match to d2f96a1
        complexed with co; mutant
      4. 2494722Domain d3ngyd_: 3ngy D: [247920]
        automated match to d2f96a1
        complexed with co; mutant
    10. Domains for 3ngz:
      1. 2494728Domain d3ngza_: 3ngz A: [247921]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex; complexed with co, mg
      2. 2494729Domain d3ngzb_: 3ngz B: [247922]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex; complexed with co, mg
    11. Domains for 3nh0:
      1. 2494734Domain d3nh0a_: 3nh0 A: [247923]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex
      2. 2494735Domain d3nh0b_: 3nh0 B: [247924]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex
    12. Domains for 3nh1:
      1. 2494724Domain d3nh1a_: 3nh1 A: [247925]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex; complexed with mg
      2. 2494725Domain d3nh1b_: 3nh1 B: [247926]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex; complexed with mg
      3. 2494726Domain d3nh1c_: 3nh1 C: [247927]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex; complexed with mg
      4. 2494727Domain d3nh1d_: 3nh1 D: [247928]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex; complexed with mg
    13. Domains for 3nh2:
      1. 2494730Domain d3nh2a_: 3nh2 A: [247929]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex
      2. 2494731Domain d3nh2b_: 3nh2 B: [247930]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex
      3. 2494732Domain d3nh2e_: 3nh2 E: [247931]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex
      4. 2494733Domain d3nh2f_: 3nh2 F: [247932]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex
    14. Domain for 4kb1:
  5. 2494741Escherichia coli [TaxId:83333] [267960] (3 PDB entries)
    1. Domain for 4kaz:
    2. Domains for 4kb0:
      1. 2494744Domain d4kb0a_: 4kb0 A: [266541]
        automated match to d3nh1a_
        protein/DNA complex; complexed with mg
      2. 2494745Domain d4kb0b_: 4kb0 B: [266542]
        automated match to d3nh1a_
        protein/DNA complex; complexed with mg
    3. Domain for 4kb1:
  6. 2494746Thermococcus gorgonarius [TaxId:71997] [225933] (6 PDB entries)
    1. Domain for 2vwj:
    2. Domain for 2vwk:
    3. Domain for 2xhb:
    4. Domain for 7b06:
    5. Domain for 7b07:
    6. Domain for 7b08:

More info for Protein automated matches from c.55.3.5: DnaQ-like 3'-5' exonuclease

Timeline for Protein automated matches from c.55.3.5: DnaQ-like 3'-5' exonuclease: