Class b: All beta proteins [48724] (178 folds) |
Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies |
Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) |
Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins) the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2 there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus) |
Protein automated matches [190854] (25 species) not a true protein |
Species Foot-and-mouth disease virus [TaxId:12110] [188180] (9 PDB entries) |
Domain d1zba1_: 1zba 1: [162437] automated match to d1qqp1_ |
Domain d1zba3_: 1zba 3: [162438] automated match to d1bbt3_ |
Domain d1zbe1_: 1zbe 1: [241128] automated match to d1fmd1_ |
Domain d1zbe3_: 1zbe 3: [241129] automated match to d1fmd3_ |
Domain d5ne41_: 5ne4 1: [335495] automated match to d1fmd1_ |
Domain d5neda_: 5ned A: [335663] automated match to d1fmd1_ |
Domain d5nedc_: 5ned C: [335661] automated match to d1qqp3_ |
Domain d5nej1_: 5nej 1: [335683] automated match to d1fmd1_ |
Domain d5nej3_: 5nej 3: [335671] automated match to d1qqp3_ |
Domain d5ner1_: 5ner 1: [335672] Other proteins in same PDB: d5nera1, d5nera2 automated match to d1qqp1_ complexed with ca, man, nag |
Domain d5ner3_: 5ner 3: [335678] Other proteins in same PDB: d5nera1, d5nera2 automated match to d1qqp3_ complexed with ca, man, nag |
Domain d5net1_: 5net 1: [335673] Other proteins in same PDB: d5neta1, d5neta2 automated match to d1qqp1_ complexed with ca, man, nag |
Domain d5net3_: 5net 3: [335707] Other proteins in same PDB: d5neta1, d5neta2 automated match to d1qqp3_ complexed with ca, man, nag |
Domain d5neu1_: 5neu 1: [335656] Other proteins in same PDB: d5neua1, d5neua2 automated match to d1qqp1_ complexed with ca, mg |
Domain d5neu3_: 5neu 3: [335682] Other proteins in same PDB: d5neua1, d5neua2 automated match to d1qqp3_ complexed with ca, mg |
Domain d7dsta_: 7dst A: [398892] Other proteins in same PDB: d7dste_ automated match to d5nej1_ |
Domain d7dstc_: 7dst C: [398938] Other proteins in same PDB: d7dste_ automated match to d1fmd3_ |
Timeline for Species Foot-and-mouth disease virus [TaxId:12110] from b.121.4.1 automated matches: