SCOPe 2.07: Domain d5nedc_: 5ned C:

Lineage for d5nedc_ (5ned C:)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins)
   the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
   there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)

6. Protein automated matches [190854] (25 species)
   not a true protein

7. Species Foot-and-mouth disease virus [TaxId:12110] [188180] (9 PDB entries)

8. Domain d5nedc_: 5ned C: [335661]
   automated match to d1qqp3_

Details for d5nedc_

PDB Entry: 5ned, 3.1 Å

PDB Description: cryoem structure of foot and mouth disease virus o panasia

PDB Compounds: (C:) O PanAsia VP3

SCOPe Domain Sequences for d5nedc_:

Sequence; same for both SEQRES and ATOM records:

>d5nedc_ b.121.4.1 (C:) automated matches {Foot-and-mouth disease virus [TaxId: 12110]}
gifpvacsdgygglvttdpktadpaygkvfnpprnmlpgrftnfldvaeacptflrfegd
vpyvttktdsdrilaqfdlslaakhmsntflaglaqyytqysgtinlhfmftgptdakar
ymiayappgmeppktpeaaahcihaewdtglnskftfsipylsaadyaytasdtaettnv
qgwvclfqithgkadgdalvvlasagkdfelrlpvdartq

Timeline for d5nedc_:

• d5nedc_ first appeared in SCOPe 2.06
  
• d5nedc_ appears in the current release, SCOPe 2.08