Lineage for Species: Foot-and-mouth disease virus [TaxId: 12110]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2075417Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2075626Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2075627Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 protein domains)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. 2075905Protein automated matches [190854] (15 species)
    not a true protein
  7. 2075930Species Foot-and-mouth disease virus [TaxId:12110] [188180] (8 PDB entries)

PDB entries in Species: Foot-and-mouth disease virus [TaxId: 12110]:

  1. Domain(s) for 1zba:
    1. 2075931Domain d1zba1_: 1zba 1: [162437]
      automated match to d1qqp1_
    2. 2075932Domain d1zba3_: 1zba 3: [162438]
      automated match to d1bbt3_
  2. Domain(s) for 1zbe:
    1. 2075933Domain d1zbe1_: 1zbe 1: [241128]
      automated match to d1fmd1_
    2. 2075934Domain d1zbe3_: 1zbe 3: [241129]
      automated match to d1fmd3_
  3. Domain(s) for 5ne4:
  4. Domain(s) for 5ned:
    1. 2292360Domain d5nedc_: 5ned C: [335661]
      automated match to d1qqp3_
    2. 2292362Domain d5neda_: 5ned A: [335663]
      automated match to d1fmd1_
  5. Domain(s) for 5nej:
    1. 2292370Domain d5nej3_: 5nej 3: [335671]
      automated match to d1qqp3_
    2. 2292382Domain d5nej1_: 5nej 1: [335683]
      automated match to d1fmd1_
  6. Domain(s) for 5ner:
    1. 2292371Domain d5ner1_: 5ner 1: [335672]
      Other proteins in same PDB: d5nera1, d5nera2
      automated match to d1qqp1_
      complexed with ca, man, nag
    2. 2292377Domain d5ner3_: 5ner 3: [335678]
      Other proteins in same PDB: d5nera1, d5nera2
      automated match to d1qqp3_
      complexed with ca, man, nag
  7. Domain(s) for 5net:
    1. 2292372Domain d5net1_: 5net 1: [335673]
      Other proteins in same PDB: d5neta1, d5neta2
      automated match to d1qqp1_
      complexed with ca, man, nag
    2. 2292406Domain d5net3_: 5net 3: [335707]
      Other proteins in same PDB: d5neta1, d5neta2
      automated match to d1qqp3_
      complexed with ca, man, nag
  8. Domain(s) for 5neu:
    1. 2292355Domain d5neu1_: 5neu 1: [335656]
      Other proteins in same PDB: d5neua1, d5neua2
      automated match to d1qqp1_
      complexed with ca, mg
    2. 2292381Domain d5neu3_: 5neu 3: [335682]
      Other proteins in same PDB: d5neua1, d5neua2
      automated match to d1qqp3_
      complexed with ca, mg

More info for Species Foot-and-mouth disease virus [TaxId:12110] from b.121.4.1 automated matches

Timeline for Species Foot-and-mouth disease virus [TaxId:12110] from b.121.4.1 automated matches: