SCOPe 2.06: Domain d3nyda1: 3nyd A:1-303

Lineage for d3nyda1 (3nyd A:1-303)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.3: beta-glycanases [51487] (27 proteins)
   consist of a number of sequence families

6. Protein automated matches [190057] (26 species)
   not a true protein

7. Species Thermoascus aurantiacus [TaxId:5087] [190006] (5 PDB entries)

8. Domain d3nyda1: 3nyd A:1-303 [182626]
   Other proteins in same PDB: d3nyda2
   automated match to d1goka_
   complexed with 3ny, act, so4

Details for d3nyda1

PDB Entry: 3nyd, 1.23 Å

PDB Description: Crystal Structure of Kemp Eliminase HG-2 Complexed with Transition State Analog 5-Nitro Benzotriazole

PDB Compounds: (A:) endo-1,4-beta-xylanase

SCOPe Domain Sequences for d3nyda1:

Sequence; same for both SEQRES and ATOM records:

>d3nyda1 c.1.8.3 (A:1-303) automated matches {Thermoascus aurantiacus [TaxId: 5087]}
eaaqsvdqlikargkvyfgvatdqnrlttgknaaiiqadfgmvwpensmkwdatepsqgn
fnfagadylvnwaqqngkligggmlvwhsqlpswvssitdkntltnvmknhittlmtryk
gkirawdvvgeafnedgslrqtvflnvigedyipiafqtaraadpnaklyimdynldsas
ypktqaivnrvkqwraagvpidgigsqthlsagqgagvlqalpllasagtpevsilmldv
agasptdyvnvvnaclnvqscvgisvfgvadpdswrasttpllfdgnfnpkpaynaivqd
lqq

Timeline for d3nyda1:

• d3nyda1 first appeared in SCOPe 2.01, called d3nyda_
  
• d3nyda1 was called d3nyda_ in SCOPe 2.05
  
• d3nyda1 appears in SCOPe 2.07
  
• d3nyda1 appears in the current release, SCOPe 2.08