Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2089714Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2093018Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2093694Family c.1.8.3: beta-glycanases [51487] (27 proteins)
    consist of a number of sequence families
  6. 2094316Protein automated matches [190057] (26 species)
    not a true protein

Species:

  1. 2094317Aspergillus niger [TaxId:425011] [311484] (1 PDB entry)
  2. 2094320Aspergillus niger [TaxId:5061] [260290] (4 PDB entries)
    1. Domains for 3wh9:
      1. 2094321Domain d3wh9a_: 3wh9 A: [260291]
        automated match to d3ziza_
        complexed with cl, nag, trs
      2. 2094322Domain d3wh9b_: 3wh9 B: [260292]
        automated match to d3ziza_
        complexed with cl, nag, trs
    2. Domain for 5i77:
    3. Domains for 5i78:
      1. 2094323Domain d5i78a1: 5i78 A:31-331 [327345]
        Other proteins in same PDB: d5i78a2, d5i78a3, d5i78b2, d5i78b3
        automated match to d1gzja_
        complexed with ca, nag, pge
      2. 2094324Domain d5i78b1: 5i78 B:31-331 [327415]
        Other proteins in same PDB: d5i78a2, d5i78a3, d5i78b2, d5i78b3
        automated match to d1gzja_
        complexed with ca, nag, pge
    4. Domains for 5i79:
      1. 2094326Domain d5i79a1: 5i79 A:31-331 [327424]
        Other proteins in same PDB: d5i79a2, d5i79b2, d5i79b3
        automated match to d1gzja_
        complexed with ca, ctt, nag, pge; mutant
      2. 2094327Domain d5i79b1: 5i79 B:31-331 [327418]
        Other proteins in same PDB: d5i79a2, d5i79b2, d5i79b3
        automated match to d1gzja_
        complexed with ca, ctt, nag, pge; mutant
  3. 2094328Bacillus agaradhaerens [TaxId:76935] [187246] (1 PDB entry)
  4. 2094330Bacillus halodurans [TaxId:86665] [188453] (1 PDB entry)
  5. 2094332Bacillus licheniformis [TaxId:1402] [187025] (3 PDB entries)
    1. Domain for 2ccr:
    2. Domains for 2gft:
      1. 2094333Domain d2gfta_: 2gft A: [164682]
        automated match to d1ur0b_
        complexed with ca; mutant
      2. 2094334Domain d2gftb_: 2gft B: [164683]
        automated match to d1ur0b_
        complexed with ca; mutant
    3. Domains for 2j74:
      1. 2094336Domain d2j74a_: 2j74 A: [147901]
        automated match to d1ur0b_
        complexed with b2g, b4g, ca
      2. 2094337Domain d2j74b_: 2j74 B: [147902]
        automated match to d1ur0b_
        complexed with b2g, b4g, ca
  6. 2094338Bacillus sp. [TaxId:253629] [312188] (1 PDB entry)
  7. 2094340Bacillus sp. [TaxId:65673] [187690] (9 PDB entries)
    1. Domains for 2f8q:
      1. 2094347Domain d2f8qa_: 2f8q A: [164282]
        automated match to d1hiza_
        complexed with mg
      2. 2094348Domain d2f8qb_: 2f8q B: [164283]
        automated match to d1hiza_
        complexed with mg
    2. Domains for 2fgl:
      1. 2094343Domain d2fgla_: 2fgl A: [164353]
        automated match to d1hiza_
        complexed with lxc, mg
      2. 2094344Domain d2fglb_: 2fgl B: [164354]
        automated match to d1hiza_
        complexed with lxc, mg
    3. Domains for 4qce:
      1. 2094354Domain d4qcea_: 4qce A: [272942]
        automated match to d2fgla_
        complexed with mg, na
      2. 2094355Domain d4qceb_: 4qce B: [272944]
        automated match to d2fgla_
        complexed with mg, na
    4. Domain for 4qcf:
    5. Domains for 4qdm:
      1. 2094345Domain d4qdma_: 4qdm A: [272955]
        automated match to d2fgla_
        complexed with gol, mg, na; mutant
      2. 2094346Domain d4qdmb_: 4qdm B: [272951]
        automated match to d2fgla_
        complexed with gol, mg, na; mutant
    6. Domains for 5eb8:
      1. 2094349Domain d5eb8a_: 5eb8 A: [324161]
        automated match to d4qdma_
        complexed with mg, na; mutant
      2. 2094350Domain d5eb8b_: 5eb8 B: [324153]
        automated match to d4qdma_
        complexed with mg, na; mutant
    7. Domain for 5eba:
    8. Domains for 5efd:
      1. 2094341Domain d5efda_: 5efd A: [324452]
        automated match to d4qdma_
        complexed with cl, edo, mg, na; mutant
      2. 2094342Domain d5efdb_: 5efd B: [324376]
        automated match to d4qdma_
        complexed with cl, edo, mg, na; mutant
    9. Domains for 5eff:
      1. 2094352Domain d5effa_: 5eff A: [324383]
        automated match to d4qdma_
        complexed with cl, mg, na; mutant
      2. 2094353Domain d5effb_: 5eff B: [324427]
        automated match to d4qdma_
        complexed with cl, mg, na; mutant
  8. 2094357Bacillus sp. [TaxId:89769] [189058] (3 PDB entries)
    1. Domain for 3emc:
    2. Domain for 3emq:
    3. Domain for 3emz:
  9. 2094361Bacteroides thetaiotaomicron [TaxId:226186] [255614] (7 PDB entries)
    1. Domains for 2vjx:
      1. 2094362Domain d2vjxa5: 2vjx A:331-678 [153207]
        Other proteins in same PDB: d2vjxa1, d2vjxa2, d2vjxa3, d2vjxa4, d2vjxb1, d2vjxb2, d2vjxb3, d2vjxb4, d2vjxb6
        automated match to d2je8a5
        complexed with br, cl, edo, ifl
      2. 2094363Domain d2vjxb5: 2vjx B:331-678 [153212]
        Other proteins in same PDB: d2vjxa1, d2vjxa2, d2vjxa3, d2vjxa4, d2vjxb1, d2vjxb2, d2vjxb3, d2vjxb4, d2vjxb6
        automated match to d2je8a5
        complexed with br, cl, edo, ifl
    2. Domains for 2vl4:
      1. 2094366Domain d2vl4a5: 2vl4 A:331-678 [153258]
        Other proteins in same PDB: d2vl4a1, d2vl4a2, d2vl4a3, d2vl4a4, d2vl4b1, d2vl4b2, d2vl4b3, d2vl4b4, d2vl4b6
        automated match to d2je8a5
        complexed with br, cl, edo, mnm
      2. 2094367Domain d2vl4b5: 2vl4 B:331-678 [153263]
        Other proteins in same PDB: d2vl4a1, d2vl4a2, d2vl4a3, d2vl4a4, d2vl4b1, d2vl4b2, d2vl4b3, d2vl4b4, d2vl4b6
        automated match to d2je8a5
        complexed with br, cl, edo, mnm
    3. Domains for 2vmf:
      1. 2094370Domain d2vmfa5: 2vmf A:331-678 [153320]
        Other proteins in same PDB: d2vmfa1, d2vmfa2, d2vmfa3, d2vmfa4, d2vmfb1, d2vmfb2, d2vmfb3, d2vmfb4, d2vmfb6
        automated match to d2je8a5
        complexed with br, cl, edo, mvl
      2. 2094371Domain d2vmfb5: 2vmf B:331-678 [153325]
        Other proteins in same PDB: d2vmfa1, d2vmfa2, d2vmfa3, d2vmfa4, d2vmfb1, d2vmfb2, d2vmfb3, d2vmfb4, d2vmfb6
        automated match to d2je8a5
        complexed with br, cl, edo, mvl
    4. Domains for 2vo5:
      1. 2094372Domain d2vo5a5: 2vo5 A:331-678 [153354]
        Other proteins in same PDB: d2vo5a1, d2vo5a2, d2vo5a3, d2vo5a4, d2vo5b1, d2vo5b2, d2vo5b3, d2vo5b4, d2vo5b6
        automated match to d2je8a5
        complexed with br, cl, edo, vbz
      2. 2094373Domain d2vo5b5: 2vo5 B:331-678 [153359]
        Other proteins in same PDB: d2vo5a1, d2vo5a2, d2vo5a3, d2vo5a4, d2vo5b1, d2vo5b2, d2vo5b3, d2vo5b4, d2vo5b6
        automated match to d2je8a5
        complexed with br, cl, edo, vbz
    5. Domains for 2vot:
      1. 2094368Domain d2vota5: 2vot A:331-678 [153383]
        Other proteins in same PDB: d2vota1, d2vota2, d2vota3, d2vota4, d2votb1, d2votb2, d2votb3, d2votb4, d2votb6
        automated match to d2je8a5
        complexed with br, cl, edo, nhv
      2. 2094369Domain d2votb5: 2vot B:331-678 [153388]
        Other proteins in same PDB: d2vota1, d2vota2, d2vota3, d2vota4, d2votb1, d2votb2, d2votb3, d2votb4, d2votb6
        automated match to d2je8a5
        complexed with br, cl, edo, nhv
    6. Domains for 2vr4:
      1. 2094364Domain d2vr4a5: 2vr4 A:331-678 [153499]
        Other proteins in same PDB: d2vr4a1, d2vr4a2, d2vr4a3, d2vr4a4, d2vr4b1, d2vr4b2, d2vr4b3, d2vr4b4, d2vr4b6
        automated match to d2je8a5
        complexed with 17b, br, cl, edo
      2. 2094365Domain d2vr4b5: 2vr4 B:331-678 [153504]
        Other proteins in same PDB: d2vr4a1, d2vr4a2, d2vr4a3, d2vr4a4, d2vr4b1, d2vr4b2, d2vr4b3, d2vr4b4, d2vr4b6
        automated match to d2je8a5
        complexed with 17b, br, cl, edo
    7. Domains for 2wbk:
      1. 2094374Domain d2wbka3: 2wbk A:331-678 [244098]
        Other proteins in same PDB: d2wbka1, d2wbka2, d2wbka4, d2wbka5, d2wbkb1, d2wbkb2, d2wbkb4, d2wbkb5, d2wbkb6
        automated match to d2je8a5
        complexed with br, cl, edo, m2f
      2. 2094375Domain d2wbkb3: 2wbk B:331-678 [244103]
        Other proteins in same PDB: d2wbka1, d2wbka2, d2wbka4, d2wbka5, d2wbkb1, d2wbkb2, d2wbkb4, d2wbkb5, d2wbkb6
        automated match to d2je8a5
        complexed with br, cl, edo, m2f
  10. Bacteroides thetaiotaomicron [TaxId:818] [255622] (1 PDB entry)
  11. 2094379Cellulomonas fimi [TaxId:1708] [231537] (1 PDB entry)
  12. 2094382Cellvibrio mixtus [TaxId:39650] [255089] (1 PDB entry)
  13. 2094384Clostridium thermocellum [TaxId:1515] [187247] (4 PDB entries)
    1. Domain for 2bvd:
    2. Domain for 2cip:
    3. Domain for 2v3g:
    4. Domain for 2vi0:
  14. 2094389Emericella nidulans [TaxId:162425] [226738] (1 PDB entry)
  15. 2094391Geobacillus sp. [TaxId:575526] [311753] (1 PDB entry)
  16. 2094393Hypocrea jecorina [TaxId:431241] [311485] (1 PDB entry)
  17. 2094395Podospora anserina [TaxId:5145] [256160] (1 PDB entry)
  18. 2094397Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId:155077] [188920] (1 PDB entry)
  19. 2094399Rubber tree (Hevea brasiliensis) [TaxId:3981] [189057] (4 PDB entries)
    1. Domains for 3em5:
      1. 2094408Domain d3em5a_: 3em5 A: [305288]
        automated match to d4hpga_
        complexed with nag, peg
      2. 2094409Domain d3em5b_: 3em5 B: [305289]
        automated match to d4hpga_
        complexed with nag, peg
      3. 2094410Domain d3em5c_: 3em5 C: [305290]
        automated match to d4hpga_
        complexed with nag, peg
      4. 2094411Domain d3em5d_: 3em5 D: [305291]
        automated match to d4hpga_
        complexed with nag, peg
    2. Domains for 3f55:
      1. 2094412Domain d3f55a_: 3f55 A: [305351]
        automated match to d4hpga_
        complexed with cac, flc, nag
      2. 2094413Domain d3f55b_: 3f55 B: [305352]
        automated match to d4hpga_
        complexed with cac, flc, nag
      3. 2094414Domain d3f55c_: 3f55 C: [305353]
        automated match to d4hpga_
        complexed with cac, flc, nag
      4. 2094415Domain d3f55d_: 3f55 D: [305354]
        automated match to d4hpga_
        complexed with cac, flc, nag
    3. Domains for 4hpg:
      1. 2094400Domain d4hpga_: 4hpg A: [229225]
        automated match to d3em5a_
        complexed with nag, peg
      2. 2094401Domain d4hpgb_: 4hpg B: [229227]
        automated match to d3em5a_
        complexed with nag, peg
      3. 2094402Domain d4hpgc_: 4hpg C: [229228]
        automated match to d3em5a_
        complexed with nag, peg
      4. 2094403Domain d4hpgd_: 4hpg D: [229224]
        automated match to d3em5a_
        complexed with nag, peg
    4. Domains for 4iis:
      1. 2094404Domain d4iisa_: 4iis A: [229244]
        automated match to d3em5a_
        complexed with cac, flc, na
      2. 2094405Domain d4iisb_: 4iis B: [229245]
        automated match to d3em5a_
        complexed with cac, flc, na
      3. 2094406Domain d4iisc_: 4iis C: [229246]
        automated match to d3em5a_
        complexed with cac, flc, na
      4. 2094407Domain d4iisd_: 4iis D: [229243]
        automated match to d3em5a_
        complexed with cac, flc, na
  20. 2094416Soil metagenome [TaxId:410658] [236610] (2 PDB entries)
    1. Domains for 4k68:
      1. 2094419Domain d4k68a_: 4k68 A: [253160]
        automated match to d1ur2a_
        complexed with gol
      2. 2094420Domain d4k68b_: 4k68 B: [253161]
        automated match to d1ur2a_
        complexed with gol
    2. Domains for 4m1r:
      1. 2094417Domain d4m1ra_: 4m1r A: [236612]
        automated match to d1egza_
        complexed with trs
      2. 2094418Domain d4m1rb_: 4m1r B: [236611]
        automated match to d1egza_
        complexed with trs
  21. 2094421Streptomyces olivaceoviridis [TaxId:1921] [225150] (10 PDB entries)
    1. Domains for 2d1z:
      1. 2094422Domain d2d1za1: 2d1z A:1-301 [203861]
        Other proteins in same PDB: d2d1za2, d2d1zb2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
      2. 2094423Domain d2d1zb1: 2d1z B:501-801 [203863]
        Other proteins in same PDB: d2d1za2, d2d1zb2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
    2. Domains for 2d20:
      1. 2094428Domain d2d20a1: 2d20 A:1-301 [203865]
        Other proteins in same PDB: d2d20a2, d2d20b2
        automated match to d1xyfa2
        complexed with gol, npo; mutant
      2. 2094429Domain d2d20b1: 2d20 B:501-801 [203867]
        Other proteins in same PDB: d2d20a2, d2d20b2
        automated match to d1xyfa2
        complexed with gol, npo; mutant
    3. Domains for 2d22:
      1. 2094424Domain d2d22a1: 2d22 A:1-301 [203869]
        Other proteins in same PDB: d2d22a2, d2d22b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
      2. 2094425Domain d2d22b1: 2d22 B:501-801 [203871]
        Other proteins in same PDB: d2d22a2, d2d22b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
    4. Domains for 2d23:
      1. 2094430Domain d2d23a1: 2d23 A:1-301 [203873]
        Other proteins in same PDB: d2d23a2, d2d23b2
        automated match to d1xyfa2
        complexed with gol; mutant
      2. 2094431Domain d2d23b1: 2d23 B:501-801 [203875]
        Other proteins in same PDB: d2d23a2, d2d23b2
        automated match to d1xyfa2
        complexed with gol; mutant
    5. Domains for 2d24:
      1. 2094426Domain d2d24a1: 2d24 A:1-301 [203877]
        Other proteins in same PDB: d2d24a2, d2d24b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
      2. 2094427Domain d2d24b1: 2d24 B:501-801 [203879]
        Other proteins in same PDB: d2d24a2, d2d24b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
    6. Domain for 2g3i:
    7. Domain for 2g3j:
    8. Domains for 2g4f:
      1. 2094436Domain d2g4fa_: 2g4f A: [204297]
        automated match to d1e0xa_
        mutant
      2. 2094437Domain d2g4fb_: 2g4f B: [204298]
        automated match to d1e0xa_
        mutant
    9. Domains for 5gqd:
      1. 2094433Domain d5gqda1: 5gqd A:1-303 [337560]
        Other proteins in same PDB: d5gqda2, d5gqdb2
        automated match to d2d1za1
        complexed with gol, xyp, xys; mutant
      2. 2094434Domain d5gqdb1: 5gqd B:501-803 [337492]
        Other proteins in same PDB: d5gqda2, d5gqdb2
        automated match to d2d1za1
        complexed with gol, xyp, xys; mutant
    10. Domains for 5gqe:
      1. 2094438Domain d5gqea1: 5gqe A:1-303 [337482]
        Other proteins in same PDB: d5gqea2, d5gqeb2
        automated match to d2d1za1
        complexed with xyp; mutant
      2. 2094439Domain d5gqeb1: 5gqe B:501-803 [337478]
        Other proteins in same PDB: d5gqea2, d5gqeb2
        automated match to d2d1za1
        complexed with xyp; mutant
  22. 2094440Streptomyces thermolilacinus [TaxId:285540] [272999] (2 PDB entries)
    1. Domains for 3wsu:
      1. 2094443Domain d3wsua1: 3wsu A:53-349 [273001]
        Other proteins in same PDB: d3wsua2
        automated match to d1bqca_
        complexed with gol, na
      2. 2094444Domain d3wsub_: 3wsu B: [273000]
        Other proteins in same PDB: d3wsua2
        automated match to d1bqca_
        complexed with gol, na
    2. Domains for 4y7e:
      1. 2094441Domain d4y7ea1: 4y7e A:51-349 [277364]
        Other proteins in same PDB: d4y7ea2
        automated match to d1bqca_
        complexed with bma, ca, gol
      2. 2094442Domain d4y7eb_: 4y7e B: [277363]
        Other proteins in same PDB: d4y7ea2
        automated match to d1bqca_
        complexed with bma, ca, gol
  23. 2094445Talaromyces verruculosus [TaxId:198730] [330334] (2 PDB entries)
    1. Domain for 5i6s:
    2. Domains for 5l9c:
      1. 2094446Domain d5l9ca_: 5l9c A: [336024]
        automated match to d1h1na_
        complexed with cbi, nag
      2. 2094447Domain d5l9cb_: 5l9c B: [336046]
        automated match to d1h1na_
        complexed with cbi, nag
      3. 2094448Domain d5l9cc_: 5l9c C: [336153]
        automated match to d1h1na_
        complexed with cbi, nag
      4. 2094449Domain d5l9cd_: 5l9c D: [336041]
        automated match to d1h1na_
        complexed with cbi, nag
  24. 2094451Thermoascus aurantiacus [TaxId:5087] [190006] (5 PDB entries)
    1. Domain for 1tax:
    2. Domain for 1tix:
    3. Domains for 3nyd:
      1. 2094455Domain d3nyda1: 3nyd A:1-303 [182626]
        Other proteins in same PDB: d3nyda2
        automated match to d1goka_
        complexed with 3ny, act, so4
      2. 2094456Domain d3nydb_: 3nyd B: [182627]
        Other proteins in same PDB: d3nyda2
        automated match to d1goka_
        complexed with 3ny, act, so4
    4. Domain for 3o2l:
    5. Domains for 4bs0:
      1. 2094452Domain d4bs0a_: 4bs0 A: [228291]
        automated match to d1goka_
        complexed with 6nt, so4
      2. 2094453Domain d4bs0b_: 4bs0 B: [234278]
        automated match to d4bs0a_
        complexed with 6nt, so4
  25. 2094459Thermotoga petrophila [TaxId:390874] [189941] (2 PDB entries)
    1. Domains for 3niy:
      1. 2094460Domain d3niya1: 3niy A:18-341 [182330]
        Other proteins in same PDB: d3niya2, d3niyb2
        automated match to d1vbra1
        complexed with act, so4
      2. 2094461Domain d3niyb1: 3niy B:18-341 [182331]
        Other proteins in same PDB: d3niya2, d3niyb2
        automated match to d1vbra1
        complexed with act, so4
    2. Domains for 3nj3:
      1. 2094462Domain d3nj3a1: 3nj3 A:18-341 [182333]
        Other proteins in same PDB: d3nj3a2, d3nj3b2
        automated match to d1vbra1
        complexed with act, so4, xyp
      2. 2094463Domain d3nj3b1: 3nj3 B:18-341 [182334]
        Other proteins in same PDB: d3nj3a2, d3nj3b2
        automated match to d1vbra1
        complexed with act, so4, xyp
  26. 2094464Yeast (Candida albicans) [TaxId:5476] [188406] (8 PDB entries)
    1. Domain for 2pbo:
    2. Domain for 2pc8:
    3. Domain for 2pf0:
    4. Domain for 3n9k:
    5. Domain for 3o6a:
    6. Domain for 4m80:
    7. Domain for 4m81:
    8. Domain for 4m82:

More info for Protein automated matches from c.1.8.3: beta-glycanases

Timeline for Protein automated matches from c.1.8.3: beta-glycanases: