SCOPe 2.08: Domain d3nkvb_: 3nkv B:

Lineage for d3nkvb_ (3nkv B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.8: G proteins [52592] (81 proteins)
   core: mixed beta-sheet of 6 strands, order 231456; strand 2 is antiparallel to the rest

6. Protein automated matches [190047] (37 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [186768] (291 PDB entries)

8. Domain d3nkvb_: 3nkv B: [182346]
   automated match to d2fola1
   complexed with amp, ba, gnp, mg

Details for d3nkvb_

PDB Entry: 3nkv, 1.7 Å

PDB Description: crystal structure of rab1b covalently modified with amp at y77

PDB Compounds: (B:) Ras-related protein Rab-1B

SCOPe Domain Sequences for d3nkvb_:

Sequence, based on SEQRES records:

>d3nkvb_ c.37.1.8 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
eydylfkllligdsgvgksclllrfaddtytesyistigvdfkirtieldgktiklqiwd
tagqerfrtitssyyrgahgiivvydvtdqesyanvkqwlqeidryasenvnkllvgnks
dlttkkvvdnttakefadslgipfletsaknatnveqafmtmaaeikkrm

Sequence, based on observed residues (ATOM records):

>d3nkvb_ c.37.1.8 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
eydylfkllligdsgvgksclllrfaddtytesyistigvdfkirtieldgktiklqiwd
tagqerfrtitssyyrgahgiivvydvtdqesyanvkqwlqeidryasnvnkllvgnksd
lttkkvvdnttakefadslgipfletsaknatnveqafmtmaaeikkrm

Timeline for d3nkvb_:

• d3nkvb_ first appeared in SCOPe 2.01
  
• d3nkvb_ appears in SCOPe 2.07