Lineage for d2ji9b3 (2ji9 B:370-553)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2864564Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2864565Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2864860Family c.36.1.9: Pyruvate oxidase and decarboxylase PP module [88749] (8 proteins)
    the N-terminal, Pyr module is separated from the C-terminal, PP module by an alpa/beta domain of Rossmann-like topology
  6. 2864971Protein Oxalyl-CoA decarboxylase [142209] (1 species)
  7. 2864972Species Oxalobacter formigenes [TaxId:847] [142210] (6 PDB entries)
    Uniprot P40149 370-552
  8. 2864978Domain d2ji9b3: 2ji9 B:370-553 [148079]
    Other proteins in same PDB: d2ji9a1, d2ji9a2, d2ji9b1, d2ji9b2
    automated match to d2c31a3
    complexed with adp, b3p, mg, tpw

Details for d2ji9b3

PDB Entry: 2ji9 (more details), 2.2 Å

PDB Description: x-ray structure of oxalyl-coa decarboxylase in complex with 3-deaza-thdp
PDB Compounds: (B:) oxalyl-coa decarboxylase

SCOPe Domain Sequences for d2ji9b3:

Sequence; same for both SEQRES and ATOM records: (download)

>d2ji9b3 c.36.1.9 (B:370-553) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

SCOPe Domain Coordinates for d2ji9b3:

Click to download the PDB-style file with coordinates for d2ji9b3.
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Timeline for d2ji9b3: