Lineage for Species: Oxalobacter formigenes [TaxId: 847]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2108258Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2108259Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2108535Family c.36.1.9: Pyruvate oxidase and decarboxylase PP module [88749] (8 protein domains)
    the N-terminal, Pyr module is separated from the C-terminal, PP module by an alpa/beta domain of Rossmann-like topology
  6. 2108627Protein Oxalyl-CoA decarboxylase [142209] (1 species)
  7. 2108628Species Oxalobacter formigenes [TaxId:847] [142210] (6 PDB entries)
    Uniprot P40149 370-552

PDB entries in Species: Oxalobacter formigenes [TaxId: 847]:

  1. Domain(s) for 2c31:
    1. 2108631Domain d2c31a3: 2c31 A:370-552 [129706]
      Other proteins in same PDB: d2c31a1, d2c31a2, d2c31b1, d2c31b2
      complexed with adp, mg, tzd
    2. 2108632Domain d2c31b3: 2c31 B:370-553 [129709]
      Other proteins in same PDB: d2c31a1, d2c31a2, d2c31b1, d2c31b2
      automated match to d2c31a3
      complexed with adp, mg, tzd
  2. Domain(s) for 2ji6:
    1. 2108633Domain d2ji6a3: 2ji6 A:370-565 [148058]
      Other proteins in same PDB: d2ji6a1, d2ji6a2, d2ji6b1, d2ji6b2
      automated match to d2c31a3
      complexed with adp, b3p, mg, oxk, pge, tpw
    2. 2108634Domain d2ji6b3: 2ji6 B:370-565 [148061]
      Other proteins in same PDB: d2ji6a1, d2ji6a2, d2ji6b1, d2ji6b2
      automated match to d2c31a3
      complexed with adp, b3p, mg, oxk, pge, tpw
  3. Domain(s) for 2ji7:
    1. 2108629Domain d2ji7a3: 2ji7 A:370-565 [148064]
      Other proteins in same PDB: d2ji7a1, d2ji7a2, d2ji7b1, d2ji7b2
      automated match to d2c31a3
      complexed with adp, b3p, mg, oxt, pge
    2. 2108630Domain d2ji7b3: 2ji7 B:370-565 [148067]
      Other proteins in same PDB: d2ji7a1, d2ji7a2, d2ji7b1, d2ji7b2
      automated match to d2c31a3
      complexed with adp, b3p, mg, oxt, pge
  4. Domain(s) for 2ji8:
    1. 2108637Domain d2ji8a3: 2ji8 A:370-565 [148070]
      Other proteins in same PDB: d2ji8a1, d2ji8a2, d2ji8b1, d2ji8b2
      automated match to d2c31a3
      complexed with adp, fyn, mg, pge, tpp
    2. 2108638Domain d2ji8b3: 2ji8 B:370-562 [148073]
      Other proteins in same PDB: d2ji8a1, d2ji8a2, d2ji8b1, d2ji8b2
      automated match to d2c31a3
      complexed with adp, fyn, mg, pge, tpp
  5. Domain(s) for 2ji9:
    1. 2108635Domain d2ji9a3: 2ji9 A:370-553 [148076]
      Other proteins in same PDB: d2ji9a1, d2ji9a2, d2ji9b1, d2ji9b2
      automated match to d2c31a3
      complexed with adp, b3p, mg, tpw
    2. 2108636Domain d2ji9b3: 2ji9 B:370-553 [148079]
      Other proteins in same PDB: d2ji9a1, d2ji9a2, d2ji9b1, d2ji9b2
      automated match to d2c31a3
      complexed with adp, b3p, mg, tpw
  6. Domain(s) for 2jib:
    1. 2108639Domain d2jiba3: 2jib A:370-565 [148082]
      Other proteins in same PDB: d2jiba1, d2jiba2, d2jibb1, d2jibb2
      automated match to d2c31a3
      complexed with adp, coa, mg, pge, tpp
    2. 2108640Domain d2jibb3: 2jib B:370-565 [148085]
      Other proteins in same PDB: d2jiba1, d2jiba2, d2jibb1, d2jibb2
      automated match to d2c31a3
      complexed with adp, coa, mg, pge, tpp

More info for Species Oxalobacter formigenes [TaxId:847] from c.36.1.9 Oxalyl-CoA decarboxylase

Timeline for Species Oxalobacter formigenes [TaxId:847] from c.36.1.9 Oxalyl-CoA decarboxylase: