SCOPe 2.08: Domain d2gumc_: 2gum C:

Lineage for d2gumc_ (2gum C:)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.76: Viral glycoprotein ectodomain-like [161007] (1 superfamily)
   complex fold; contains three rigid, mostly-beta domains and an alpha-helical region, acting as a conformatiomal switch ("fusion stalk")

4. Superfamily e.76.1: Viral glycoprotein ectodomain-like [161008] (3 families)

5. Family e.76.1.1: Glycoprotein B-like [161009] (1 protein)
   Pfam PF00606; Herpesvirus Glycoprotein B

6. Protein Glycoprotein B [161010] (1 species)

7. Species Human herpesvirus 1 [TaxId:10298] [161011] (7 PDB entries)
   Uniprot P06437 111-725

8. Domain d2gumc_: 2gum C: [147186]
   automated match to d2guma1
   complexed with na

Details for d2gumc_

PDB Entry: 2gum, 2.1 Å

PDB Description: crystal structure of the extracellular domain of glycoprotein b from herpes simplex virus type i

PDB Compounds: (C:) Glycoprotein B

SCOPe Domain Sequences for d2gumc_:

Sequence, based on SEQRES records:

>d2gumc_ e.76.1.1 (C:) Glycoprotein B {Human herpesvirus 1 [TaxId: 10298]}
tdanfyvcppptgatvvqfeqprrcptrpegqnytegiavvfkeniapykfkatmyykdv
tvsqvwfghrysqfmgifedrapvpfeevidkinakgvcrstakyvrnnlettafhrddh
etdmelkpanaatrtsrgwhttdlkynpsrveafhrygttvnciveevdarsvypydefv
latgdfvymspfygyregshtehttyaadrfkqvdgfyardlttkaratapttrnllttp
kftvawdwvpkrpsvctmtkwqevdemlrseyggsfrfssdaisttfttnlteyplsrvd
lgdcigkdardamdrifarrynathikvgqpqyyqanggfliayqpllsntlaelyvreh
lreqsrkppnptppppgasanasverikttssiefarlqftynhiqrhvndmlgrvaiaw
celqnheltlwnearklnpnaiasvtvgrrvsarmlgdvmavstcvpvaadnvivqnsmr
issrpgacysrplvsfryedqgplvegqlgennelrltrdaiepctvghrryftfgggyv
yfeeyayshqlsradittvstfidlnitmledhefvplevytrheikdsglldytevqrr
nqlhdlrfadidtvi

Sequence, based on observed residues (ATOM records):

>d2gumc_ e.76.1.1 (C:) Glycoprotein B {Human herpesvirus 1 [TaxId: 10298]}
tdanfyvcppptgatvvqfeqprrcptrpegqnytegiavvfkeniapykfkatmyykdv
tvsqvwfghrysqfmgifedrapvpfeevidkinakgvcrstakyvrnnlettafhrddh
etdmelkpanaatrtsrgwhttdlkynpsrveafhrygttvnciveevdarsvypydefv
latgdfvymspfygyregshtehttyaadrfkqvdgfyatapttrnllttpkftvawdwv
pkrpsvctmtkwqevdemlrseyggsfrfssdaisttfttnlteyplsrvdlgdcigkda
rdamdrifarrynathikvgqpqyyqanggfliayqpllsntsverikttssiefarlqf
tynhiqrhvndmlgrvaiawcelqnheltlwnearklnpnaiasvtvgrrvsarmlgdvm
avstcvpvaadnvivqnsmrissrpgacysrplvsfryedqgplvegqlgennelrltrd
aiepctvghrryftfgggyvyfeeyayshqlsradittvstfidlnitmledhefvplev
ytrheikdsglldytevqrrnqlhdlrfadidtvi

Timeline for d2gumc_:

• d2gumc_ first appeared in SCOP 1.75, called d2gumc1
  
• d2gumc_ appears in SCOPe 2.07