SCOPe 2.08: Domain d2gumb_: 2gum B:

Lineage for d2gumb_ (2gum B:)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.76: Viral glycoprotein ectodomain-like [161007] (1 superfamily)
   complex fold; contains three rigid, mostly-beta domains and an alpha-helical region, acting as a conformatiomal switch ("fusion stalk")

4. Superfamily e.76.1: Viral glycoprotein ectodomain-like [161008] (3 families)

5. Family e.76.1.1: Glycoprotein B-like [161009] (1 protein)
   Pfam PF00606; Herpesvirus Glycoprotein B

6. Protein Glycoprotein B [161010] (1 species)

7. Species Human herpesvirus 1 [TaxId:10298] [161011] (7 PDB entries)
   Uniprot P06437 111-725

8. Domain d2gumb_: 2gum B: [147185]
   automated match to d2guma1
   complexed with na

Details for d2gumb_

PDB Entry: 2gum, 2.1 Å

PDB Description: crystal structure of the extracellular domain of glycoprotein b from herpes simplex virus type i

PDB Compounds: (B:) Glycoprotein B

SCOPe Domain Sequences for d2gumb_:

Sequence, based on SEQRES records:

>d2gumb_ e.76.1.1 (B:) Glycoprotein B {Human herpesvirus 1 [TaxId: 10298]}
tdanfyvcppptgatvvqfeqprrcptrpegqnytegiavvfkeniapykfkatmyykdv
tvsqvwfghrysqfmgifedrapvpfeevidkinakgvcrstakyvrnnlettafhrddh
etdmelkpanaatrtsrgwhttdlkynpsrveafhrygttvnciveevdarsvypydefv
latgdfvymspfygyregshtehttyaadrfkqvdgfyardlttkaratapttrnllttp
kftvawdwvpkrpsvctmtkwqevdemlrseyggsfrfssdaisttfttnlteyplsrvd
lgdcigkdardamdrifarrynathikvgqpqyyqanggfliayqpllsntlaelyvreh
lreqsrkppnptppppgasanasverikttssiefarlqftynhiqrhvndmlgrvaiaw
celqnheltlwnearklnpnaiasvtvgrrvsarmlgdvmavstcvpvaadnvivqnsmr
issrpgacysrplvsfryedqgplvegqlgennelrltrdaiepctvghrryftfgggyv
yfeeyayshqlsradittvstfidlnitmledhefvplevytrheikdsglldytevqrr
nqlhdlrfadidtvih

Sequence, based on observed residues (ATOM records):

>d2gumb_ e.76.1.1 (B:) Glycoprotein B {Human herpesvirus 1 [TaxId: 10298]}
tdanfyvcppptgatvvqfeqprrcptrpegqnytegiavvfkeniapykfkatmyykdv
tvsqvwfghrysqfmgifedrapvpfeevidkinakgvcrstakyvrnnlettafhrddh
etdmelkpanaatrtsrgwhttdlkynpsrveafhrygttvnciveevdarsvypydefv
latgdfvymspfygyregshtehttyaadrfkqvdgfyardltapttrnllttpkftvaw
dwvpkrpsvctmtkwqevdemlrseyggsfrfssdaisttfttnlteyplsrvdlgdcig
kdardamdrifarrynathikvgqpqyyqanggfliayqpllsntlasverikttssief
arlqftynhiqrhvndmlgrvaiawcelqnheltlwnearklnpnaiasvtvgrrvsarm
lgdvmavstcvpvaadnvivqnsmrissrpgacysrplvsfryedqgplvegqlgennel
rltrdaiepctvghrryftfgggyvyfeeyayshqlsradittvstfidlnitmledhef
vplevytrheikdsglldytevqrrnqlhdlrfadidtvih

Timeline for d2gumb_:

• d2gumb_ first appeared in SCOP 1.75, called d2gumb1
  
• d2gumb_ appears in SCOPe 2.07