SCOPe 2.08: Domain d2guma1: 2gum A:111-725

Lineage for d2guma1 (2gum A:111-725)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.76: Viral glycoprotein ectodomain-like [161007] (1 superfamily)
   complex fold; contains three rigid, mostly-beta domains and an alpha-helical region, acting as a conformatiomal switch ("fusion stalk")

4. Superfamily e.76.1: Viral glycoprotein ectodomain-like [161008] (3 families)

5. Family e.76.1.1: Glycoprotein B-like [161009] (1 protein)
   Pfam PF00606; Herpesvirus Glycoprotein B

6. Protein Glycoprotein B [161010] (1 species)

7. Species Human herpesvirus 1 [TaxId:10298] [161011] (7 PDB entries)
   Uniprot P06437 111-725

8. Domain d2guma1: 2gum A:111-725 [147184]
   complexed with na

Details for d2guma1

PDB Entry: 2gum, 2.1 Å

PDB Description: crystal structure of the extracellular domain of glycoprotein b from herpes simplex virus type i

PDB Compounds: (A:) Glycoprotein B

SCOPe Domain Sequences for d2guma1:

Sequence, based on SEQRES records:

>d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1 [TaxId: 10298]}
anfyvcppptgatvvqfeqprrcptrpegqnytegiavvfkeniapykfkatmyykdvtv
sqvwfghrysqfmgifedrapvpfeevidkinakgvcrstakyvrnnlettafhrddhet
dmelkpanaatrtsrgwhttdlkynpsrveafhrygttvnciveevdarsvypydefvla
tgdfvymspfygyregshtehttyaadrfkqvdgfyardlttkaratapttrnllttpkf
tvawdwvpkrpsvctmtkwqevdemlrseyggsfrfssdaisttfttnlteyplsrvdlg
dcigkdardamdrifarrynathikvgqpqyyqanggfliayqpllsntlaelyvrehlr
eqsrkppnptppppgasanasverikttssiefarlqftynhiqrhvndmlgrvaiawce
lqnheltlwnearklnpnaiasvtvgrrvsarmlgdvmavstcvpvaadnvivqnsmris
srpgacysrplvsfryedqgplvegqlgennelrltrdaiepctvghrryftfgggyvyf
eeyayshqlsradittvstfidlnitmledhefvplevytrheikdsglldytevqrrnq
lhdlrfadidtviha

Sequence, based on observed residues (ATOM records):

>d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1 [TaxId: 10298]}
anfyvcppptgatvvqfeqprrcptrpegqnytegiavvfkeniapykfkatmyykdvtv
sqvwfghrysqfmgifedrapvpfeevidkinakgvcrstakyvrnnlettafhrddhet
dmelkpanaatrtsrgwhttdlkynpsrveafhrygttvnciveevdarsvypydefvla
tgdfvymspfygyregshtehttyaadrfkqvdgfyardlapttrnllttpkftvawdwv
pkrpsvctmtkwqevdemlrseyggsfrfssdaisttfttnlteyplsrvdlgdcigkda
rdamdrifarrynathikvgqpqyyqanggfliayqpllsntverikttssiefarlqft
ynhiqrhvndmlgrvaiawcelqnheltlwnearklnpnaiasvtvgrrvsarmlgdvma
vstcvpvaadnvivqnsmrissrpgacysrplvsfryedqgplvegqlgennelrltrda
iepctvghrryftfgggyvyfeeyayshqlsradittvstfidlnitmledhefvplevy
trheikdsglldytevqrrnqlhdlrfadidtviha

Timeline for d2guma1:

• d2guma1 first appeared in SCOP 1.75
  
• d2guma1 appears in SCOPe 2.07