PDB entry 2gum

View 2gum on RCSB PDB site
Description: Crystal structure of the extracellular domain of glycoprotein B from Herpes Simplex Virus type I
Class: viral protein
Keywords: envelope glycoprotein, membrane fusion, viral protein
Deposited on 2006-05-01, released 2006-07-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-18, with a file datestamp of 2017-10-13.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycoprotein B
    Species: Human herpesvirus 1 [TaxId:10306]
    Gene: GB, UL27
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2guma1
  • Chain 'B':
    Compound: Glycoprotein B
    Species: Human herpesvirus 1 [TaxId:10306]
    Gene: GB, UL27
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2gumb_
  • Chain 'C':
    Compound: Glycoprotein B
    Species: Human herpesvirus 1 [TaxId:10306]
    Gene: GB, UL27
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2gumc_
  • Heterogens: NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2gumA (A:)
dikaentdanfyvcppptgatvvqfeqprrcptrpegqnytegiavvfkeniapykfkat
myykdvtvsqvwfghrysqfmgifedrapvpfeevidkinakgvcrstakyvrnnletta
fhrddhetdmelkpanaatrtsrgwhttdlkynpsrveafhrygttvnciveevdarsvy
pydefvlatgdfvymspfygyregshtehttyaadrfkqvdgfyardlttkaratapttr
nllttpkftvawdwvpkrpsvctmtkwqevdemlrseyggsfrfssdaisttfttnltey
plsrvdlgdcigkdardamdrifarrynathikvgqpqyyqanggfliayqpllsntlae
lyvrehlreqsrkppnptppppgasanasverikttssiefarlqftynhiqrhvndmlg
rvaiawcelqnheltlwnearklnpnaiasvtvgrrvsarmlgdvmavstcvpvaadnvi
vqnsmrissrpgacysrplvsfryedqgplvegqlgennelrltrdaiepctvghrryft
fgggyvyfeeyayshqlsradittvstfidlnitmledhefvplevytrheikdsglldy
tevqrrnqlhdlrfadidtvihadanaa

    Sequence, based on observed residues (ATOM records): (download) 
    >2gumA (A:)
anfyvcppptgatvvqfeqprrcptrpegqnytegiavvfkeniapykfkatmyykdvtv
sqvwfghrysqfmgifedrapvpfeevidkinakgvcrstakyvrnnlettafhrddhet
dmelkpanaatrtsrgwhttdlkynpsrveafhrygttvnciveevdarsvypydefvla
tgdfvymspfygyregshtehttyaadrfkqvdgfyardlapttrnllttpkftvawdwv
pkrpsvctmtkwqevdemlrseyggsfrfssdaisttfttnlteyplsrvdlgdcigkda
rdamdrifarrynathikvgqpqyyqanggfliayqpllsntverikttssiefarlqft
ynhiqrhvndmlgrvaiawcelqnheltlwnearklnpnaiasvtvgrrvsarmlgdvma
vstcvpvaadnvivqnsmrissrpgacysrplvsfryedqgplvegqlgennelrltrda
iepctvghrryftfgggyvyfeeyayshqlsradittvstfidlnitmledhefvplevy
trheikdsglldytevqrrnqlhdlrfadidtviha

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2gumB (B:)
dikaentdanfyvcppptgatvvqfeqprrcptrpegqnytegiavvfkeniapykfkat
myykdvtvsqvwfghrysqfmgifedrapvpfeevidkinakgvcrstakyvrnnletta
fhrddhetdmelkpanaatrtsrgwhttdlkynpsrveafhrygttvnciveevdarsvy
pydefvlatgdfvymspfygyregshtehttyaadrfkqvdgfyardlttkaratapttr
nllttpkftvawdwvpkrpsvctmtkwqevdemlrseyggsfrfssdaisttfttnltey
plsrvdlgdcigkdardamdrifarrynathikvgqpqyyqanggfliayqpllsntlae
lyvrehlreqsrkppnptppppgasanasverikttssiefarlqftynhiqrhvndmlg
rvaiawcelqnheltlwnearklnpnaiasvtvgrrvsarmlgdvmavstcvpvaadnvi
vqnsmrissrpgacysrplvsfryedqgplvegqlgennelrltrdaiepctvghrryft
fgggyvyfeeyayshqlsradittvstfidlnitmledhefvplevytrheikdsglldy
tevqrrnqlhdlrfadidtvihadanaa

    Sequence, based on observed residues (ATOM records): (download) 
    >2gumB (B:)
tdanfyvcppptgatvvqfeqprrcptrpegqnytegiavvfkeniapykfkatmyykdv
tvsqvwfghrysqfmgifedrapvpfeevidkinakgvcrstakyvrnnlettafhrddh
etdmelkpanaatrtsrgwhttdlkynpsrveafhrygttvnciveevdarsvypydefv
latgdfvymspfygyregshtehttyaadrfkqvdgfyardltapttrnllttpkftvaw
dwvpkrpsvctmtkwqevdemlrseyggsfrfssdaisttfttnlteyplsrvdlgdcig
kdardamdrifarrynathikvgqpqyyqanggfliayqpllsntlasverikttssief
arlqftynhiqrhvndmlgrvaiawcelqnheltlwnearklnpnaiasvtvgrrvsarm
lgdvmavstcvpvaadnvivqnsmrissrpgacysrplvsfryedqgplvegqlgennel
rltrdaiepctvghrryftfgggyvyfeeyayshqlsradittvstfidlnitmledhef
vplevytrheikdsglldytevqrrnqlhdlrfadidtvih

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2gumC (C:)
dikaentdanfyvcppptgatvvqfeqprrcptrpegqnytegiavvfkeniapykfkat
myykdvtvsqvwfghrysqfmgifedrapvpfeevidkinakgvcrstakyvrnnletta
fhrddhetdmelkpanaatrtsrgwhttdlkynpsrveafhrygttvnciveevdarsvy
pydefvlatgdfvymspfygyregshtehttyaadrfkqvdgfyardlttkaratapttr
nllttpkftvawdwvpkrpsvctmtkwqevdemlrseyggsfrfssdaisttfttnltey
plsrvdlgdcigkdardamdrifarrynathikvgqpqyyqanggfliayqpllsntlae
lyvrehlreqsrkppnptppppgasanasverikttssiefarlqftynhiqrhvndmlg
rvaiawcelqnheltlwnearklnpnaiasvtvgrrvsarmlgdvmavstcvpvaadnvi
vqnsmrissrpgacysrplvsfryedqgplvegqlgennelrltrdaiepctvghrryft
fgggyvyfeeyayshqlsradittvstfidlnitmledhefvplevytrheikdsglldy
tevqrrnqlhdlrfadidtvihadanaa

    Sequence, based on observed residues (ATOM records): (download) 
    >2gumC (C:)
tdanfyvcppptgatvvqfeqprrcptrpegqnytegiavvfkeniapykfkatmyykdv
tvsqvwfghrysqfmgifedrapvpfeevidkinakgvcrstakyvrnnlettafhrddh
etdmelkpanaatrtsrgwhttdlkynpsrveafhrygttvnciveevdarsvypydefv
latgdfvymspfygyregshtehttyaadrfkqvdgfyatapttrnllttpkftvawdwv
pkrpsvctmtkwqevdemlrseyggsfrfssdaisttfttnlteyplsrvdlgdcigkda
rdamdrifarrynathikvgqpqyyqanggfliayqpllsntsverikttssiefarlqf
tynhiqrhvndmlgrvaiawcelqnheltlwnearklnpnaiasvtvgrrvsarmlgdvm
avstcvpvaadnvivqnsmrissrpgacysrplvsfryedqgplvegqlgennelrltrd
aiepctvghrryftfgggyvyfeeyayshqlsradittvstfidlnitmledhefvplev
ytrheikdsglldytevqrrnqlhdlrfadidtvi