SCOPe 2.08: Domain d2e2ib1: 2e2i B:20-1224

Lineage for d2e2ib1 (2e2i B:20-1224)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily)
   Multidomain subunits of complex domain organization

4. Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (3 families)
   The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit

5. Family e.29.1.1: RNA-polymerase beta [64485] (4 proteins)

6. Protein RBP2 [64491] (2 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64492] (27 PDB entries)
   Uniprot P08518; part of multichain biological unit

8. Domain d2e2ib1: 2e2i B:20-1224 [131995]
   Other proteins in same PDB: d2e2ia1, d2e2ic1, d2e2ic2, d2e2ie1, d2e2ie2, d2e2if1, d2e2ih1, d2e2ii1, d2e2ii2, d2e2ij1, d2e2ik1, d2e2il1
   automatically matched to d1i50b_
   protein/DNA complex; protein/RNA complex; complexed with dgt, mg, zn

Details for d2e2ib1

PDB Entry: 2e2i, 3.41 Å

PDB Description: RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTP

PDB Compounds: (B:) DNA-directed RNA polymerase II 140 kDa polypeptide

SCOPe Domain Sequences for d2e2ib1:

Sequence, based on SEQRES records:

>d2e2ib1 e.29.1.1 (B:20-1224) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstlileqlaqhtt
esdnisrkyeisfgkiyvtkpmvnesdgvthalypqearlrnltyssglfvdvkkrtyea
idvpgrelkyeliaeeseddsesgkvfigrlpimlrskncylseatesdlyklkecpfdm
ggyfiingsekvliaqersagnivqvfkkaapspishvaeirsalekgsrfistlqvkly
gregssartikatlpyikqdipiviifralgiipdgeilehicydvndwqmlemlkpcve
dgfviqdretaldfigrrgtalgikkekriqyakdilqkeflphitqlegfesrkafflg
yminrlllcaldrkdqddrdhfgkkrldlagpllaqlfktlfkkltkdifrymqrtveea
hdfnmklainaktitsglkyalatgnwgeqkkamssragvsqvlnrytysstlshlrrtn
tpigrdgklakprqlhnthwglvcpaetpegqacglvknlslmscisvgtdpmpiitfls
ewgmepledyvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdi
rekelkiftdagrvyrplfiveddeslghkelkvrkghiaklmateyqdieggfedveey
twssllneglveyidaeeeesiliamqpedlepaeaneendldvdpakrirvshhattft
hceihpsmilgvaasiipfpdhnqsprntyqsamgkqamgvfltnynvrmdtmanilyyp
qkplgttrameylkfrelpagqnaivaiacysgynqedsmimnqssidrglfrslffrsy
mdqekkygmsitetfekpqrtntlrmkhgtydkldddgliapgvrvsgedviigkttpis
pdeeelgqrtayhskrdastplrstengivdqvlvttnqdglkfvkvrvrttkipqigdk
fasrhgqkgtigityrredmpftaegivpdliinphaipsrmtvahliecllskvaalsg
negdaspftditvegiskllrehgyqsrgfevmynghtgkklmaqiffgptyyqrlrhmv
ddkiharargpmqvltrqpvegrsrdgglrfgemerdcmiahgaasflkerlmeasdafr
vhicgicglmtviaklnhnqfeckgcdnkidiyqihipyaakllfqelmamnitprlytd
rsrdf

Sequence, based on observed residues (ATOM records):

>d2e2ib1 e.29.1.1 (B:20-1224) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstlileqyeisfg
kiyvtkpmvnesdgvthalypqearlrnltyssglfvdvkkrtyeaidvpgrelkvfigr
lpimlrskncylseatesdlyklkecpfdmggyfiingsekvliaqersagnivqvfkka
apspishvaeirsalekgsrfistlqvklygregssartikatlpyikqdipiviifral
giipdgeilehicydvndwqmlemlkpcvedgfviqdretaldfigrrgtalgikkekri
qyakdilqkeflphitqlegfesrkafflgyminrlllcaldrkdqddrdhfgkkrldla
gpllaqlfktlfkkltkdifrymqrtvenmklainaktitsglkyalatgnwgeqkkams
sragvsqvlnrytysstlshlrrtntpigrdgklakprqlhnthwglvcpaetpegqacg
lvknlslmscisvgtdpmpiitflsewgmepledyvphqspdatrvfvngvwhgvhrnpa
rlmetlrtlrrkgdinpevsmirdirekelkiftdagrvyrplfiveddeslghkelkvr
kghiaklmateyqdveeytwssllneglveyidaeeeesiliamqpedlepaedvdpakr
irvshhattfthceihpsmilgvaasiipfpdhnqsprntyqsamgkqamgvfltnynvr
mdtmanilyypqkplgttrameylkfrelpagqnaivaiacysgynqedsmimnqssidr
glfrslffrsymdqekkygmsitetfekpqrtntlrmkhgtydkldddgliapgvrvsge
dviigkttpisskrdastplrstengivdqvlvttnqdglkfvkvrvrttkipqigdkfa
srhgqkgtigityrredmpftaegivpdliinphaipsrmtvahliecllskvaalsgne
gdaspftditvegiskllrehgyqsrgfevmynghtgkklmaqiffgptyyqrlrhmvdd
kiharargpmqvltrqpvegrsrdgglrfgemerdcmiahgaasflkerlmeasdafrvh
icgicglmtviaklnhnqfeckgcdnkidiyqihipyaakllfqelmamnitprlytdrs
rdf

Timeline for d2e2ib1:

• d2e2ib1 first appeared in SCOP 1.73
  
• d2e2ib1 appears in SCOPe 2.07