Lineage for d2e2ib1 (2e2i B:20-1224)

  1. Root: SCOPe 2.07
  2. 2568173Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
  3. 2574250Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily)
    Multidomain subunits of complex domain organization
  4. 2574251Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (2 families) (S)
    The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit
  5. 2574252Family e.29.1.1: RNA-polymerase beta [64485] (4 proteins)
  6. 2574253Protein RBP2 [64491] (2 species)
  7. 2574254Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64492] (27 PDB entries)
    Uniprot P08518; part of multichain biological unit
  8. 2574265Domain d2e2ib1: 2e2i B:20-1224 [131995]
    Other proteins in same PDB: d2e2ia1, d2e2ic1, d2e2ic2, d2e2ie1, d2e2ie2, d2e2if1, d2e2ih1, d2e2ii1, d2e2ii2, d2e2ij1, d2e2ik1, d2e2il1
    automatically matched to d1i50b_
    protein/DNA complex; protein/RNA complex; complexed with dgt, mg, zn

Details for d2e2ib1

PDB Entry: 2e2i (more details), 3.41 Å

PDB Description: RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTP
PDB Compounds: (B:) DNA-directed RNA polymerase II 140 kDa polypeptide

SCOPe Domain Sequences for d2e2ib1:

Sequence, based on SEQRES records: (download)

>d2e2ib1 e.29.1.1 (B:20-1224) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstlileqlaqhtt
esdnisrkyeisfgkiyvtkpmvnesdgvthalypqearlrnltyssglfvdvkkrtyea
idvpgrelkyeliaeeseddsesgkvfigrlpimlrskncylseatesdlyklkecpfdm
ggyfiingsekvliaqersagnivqvfkkaapspishvaeirsalekgsrfistlqvkly
gregssartikatlpyikqdipiviifralgiipdgeilehicydvndwqmlemlkpcve
dgfviqdretaldfigrrgtalgikkekriqyakdilqkeflphitqlegfesrkafflg
yminrlllcaldrkdqddrdhfgkkrldlagpllaqlfktlfkkltkdifrymqrtveea
hdfnmklainaktitsglkyalatgnwgeqkkamssragvsqvlnrytysstlshlrrtn
tpigrdgklakprqlhnthwglvcpaetpegqacglvknlslmscisvgtdpmpiitfls
ewgmepledyvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdi
rekelkiftdagrvyrplfiveddeslghkelkvrkghiaklmateyqdieggfedveey
twssllneglveyidaeeeesiliamqpedlepaeaneendldvdpakrirvshhattft
hceihpsmilgvaasiipfpdhnqsprntyqsamgkqamgvfltnynvrmdtmanilyyp
qkplgttrameylkfrelpagqnaivaiacysgynqedsmimnqssidrglfrslffrsy
mdqekkygmsitetfekpqrtntlrmkhgtydkldddgliapgvrvsgedviigkttpis
pdeeelgqrtayhskrdastplrstengivdqvlvttnqdglkfvkvrvrttkipqigdk
fasrhgqkgtigityrredmpftaegivpdliinphaipsrmtvahliecllskvaalsg
negdaspftditvegiskllrehgyqsrgfevmynghtgkklmaqiffgptyyqrlrhmv
ddkiharargpmqvltrqpvegrsrdgglrfgemerdcmiahgaasflkerlmeasdafr
vhicgicglmtviaklnhnqfeckgcdnkidiyqihipyaakllfqelmamnitprlytd
rsrdf

Sequence, based on observed residues (ATOM records): (download)

>d2e2ib1 e.29.1.1 (B:20-1224) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstlileqyeisfg
kiyvtkpmvnesdgvthalypqearlrnltyssglfvdvkkrtyeaidvpgrelkvfigr
lpimlrskncylseatesdlyklkecpfdmggyfiingsekvliaqersagnivqvfkka
apspishvaeirsalekgsrfistlqvklygregssartikatlpyikqdipiviifral
giipdgeilehicydvndwqmlemlkpcvedgfviqdretaldfigrrgtalgikkekri
qyakdilqkeflphitqlegfesrkafflgyminrlllcaldrkdqddrdhfgkkrldla
gpllaqlfktlfkkltkdifrymqrtvenmklainaktitsglkyalatgnwgeqkkams
sragvsqvlnrytysstlshlrrtntpigrdgklakprqlhnthwglvcpaetpegqacg
lvknlslmscisvgtdpmpiitflsewgmepledyvphqspdatrvfvngvwhgvhrnpa
rlmetlrtlrrkgdinpevsmirdirekelkiftdagrvyrplfiveddeslghkelkvr
kghiaklmateyqdveeytwssllneglveyidaeeeesiliamqpedlepaedvdpakr
irvshhattfthceihpsmilgvaasiipfpdhnqsprntyqsamgkqamgvfltnynvr
mdtmanilyypqkplgttrameylkfrelpagqnaivaiacysgynqedsmimnqssidr
glfrslffrsymdqekkygmsitetfekpqrtntlrmkhgtydkldddgliapgvrvsge
dviigkttpisskrdastplrstengivdqvlvttnqdglkfvkvrvrttkipqigdkfa
srhgqkgtigityrredmpftaegivpdliinphaipsrmtvahliecllskvaalsgne
gdaspftditvegiskllrehgyqsrgfevmynghtgkklmaqiffgptyyqrlrhmvdd
kiharargpmqvltrqpvegrsrdgglrfgemerdcmiahgaasflkerlmeasdafrvh
icgicglmtviaklnhnqfeckgcdnkidiyqihipyaakllfqelmamnitprlytdrs
rdf

SCOPe Domain Coordinates for d2e2ib1:

Click to download the PDB-style file with coordinates for d2e2ib1.
(The format of our PDB-style files is described here.)

Timeline for d2e2ib1: