Lineage for d2deyx1 (2dey X:113-293)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2033752Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (9 superfamilies)
    sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
  4. 2034735Superfamily b.2.9: Peptidylarginine deiminase Pad4, middle domain [110083] (2 families) (S)
    automatically mapped to Pfam PF08527
  5. 2034736Family b.2.9.1: Peptidylarginine deiminase Pad4, middle domain [110084] (1 protein)
  6. 2034737Protein Peptidylarginine deiminase Pad4, middle domain [110085] (1 species)
  7. 2034738Species Human (Homo sapiens) [TaxId:9606] [110086] (17 PDB entries)
    Uniprot Q9UM07
  8. 2034742Domain d2deyx1: 2dey X:113-293 [131439]
    Other proteins in same PDB: d2deyx2, d2deyx3
    automatically matched to d1wd8a1
    complexed with ca, so4

Details for d2deyx1

PDB Entry: 2dey (more details), 2.25 Å

PDB Description: Crystal structure of human peptidylarginine deiminase 4 in complex with histone H4 N-terminal tail including Arg3
PDB Compounds: (X:) Protein-arginine deiminase type IV

SCOPe Domain Sequences for d2deyx1:

Sequence, based on SEQRES records: (download)

>d2deyx1 b.2.9.1 (X:113-293) Peptidylarginine deiminase Pad4, middle domain {Human (Homo sapiens) [TaxId: 9606]}
veislcaditrtgkvkptravkdqrtwtwgpcgqgaillvncdrdnlessamdceddevl
dsedlqdmslmtlstktpkdfftnhtlvlhvarsemdkvrvfqatrgklsskcsvvlgpk
wpshylmvpggkhnmdfyvealafpdtdfpglitltislldtsnlelpeavvfqdsvvfr
v

Sequence, based on observed residues (ATOM records): (download)

>d2deyx1 b.2.9.1 (X:113-293) Peptidylarginine deiminase Pad4, middle domain {Human (Homo sapiens) [TaxId: 9606]}
veislcaditrtgkqrtwtwgpcgqgaillvncdrdnlessamdceddevldsedlqdms
lmtlstktpkdfftnhtlvlhvarsemdkvrvfqatcsvvlgpkwpshylmvpggkhnmd
fyvealafpdtdfpglitltislldtsnlelpeavvfqdsvvfrv

SCOPe Domain Coordinates for d2deyx1:

Click to download the PDB-style file with coordinates for d2deyx1.
(The format of our PDB-style files is described here.)

Timeline for d2deyx1: