SCOPe 2.03: Domain d1yvpb1: 1yvp B:4-363

Lineage for d1yvpb1 (1yvp B:4-363)

1. Root: SCOPe 2.03

2. Class a: All alpha proteins [46456] (284 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (24 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.25: TROVE domain-like [140864] (1 family)
   consist of two superhelical sections arranged like a horse-shoe
   automatically mapped to Pfam PF05731

5. Family a.118.25.1: TROVE domain-like [140865] (1 protein)
   Pfam PF05731

6. Protein 60-kda SS-aARo ribonucleoprotein [140866] (1 species)

7. Species African clawed frog (Xenopus laevis) [TaxId:8355] [140867] (3 PDB entries)
   Uniprot P42700 5-363

8. Domain d1yvpb1: 1yvp B:4-363 [124110]
   Other proteins in same PDB: d1yvpa2, d1yvpb2
   automated match to d1yvpa1
   protein/RNA complex; complexed with act, mg

Details for d1yvpb1

PDB Entry: 1yvp, 2.2 Å

PDB Description: Ro autoantigen complexed with RNAs

PDB Compounds: (B:) 60-kDa SS-A/Ro ribonucleoprotein

SCOPe Domain Sequences for d1yvpb1:

Sequence, based on SEQRES records:

>d1yvpb1 a.118.25.1 (B:4-363) 60-kda SS-aARo ribonucleoprotein {African clawed frog (Xenopus laevis) [TaxId: 8355]}
tmdqtqplnekqvpnsegcyvwqvsdmnrlrrflcfgseggtyyieekklgqenaeallr
liedgkgcevvqeiktfsqegraakqeptlfalavcsqcsdiktkqaafravpevcript
hlftfiqfkkdlkegmkcgmwgralrkavsdwyntkdalnlamavtkykqrngwshkdll
rlshikpanegltmvakyvskgwkevqeaykekelspetekvlkyleatervkrtkdele
iihlideyrlvrehlltihlkskeiwksllqdmpltallrnlgkmtadsvlapassevss
vcerltnekllkkarihpfhilvaletykkghgnrgklrwipdtsivealdnafyksfkl

Sequence, based on observed residues (ATOM records):

>d1yvpb1 a.118.25.1 (B:4-363) 60-kda SS-aARo ribonucleoprotein {African clawed frog (Xenopus laevis) [TaxId: 8355]}
tmdqtqplnekqvpnsegcyvwqvsdmnrlrrflcfgseggtyyieekklgqenaeallr
liedgkgcevvqeiktfsqegraakqeptlfalavcsqcsdiktkqaafravpevcript
hlftfiqfkkdlkegmkcgmwgralrkavsdwyntkdalnlamavtkykqrngwshkdll
rlshikpanegltmvakyvskgwkevqeaykekelspetekvlkyleatervkrtkdele
iihlideyrlvrehlltihlkskeiwksllqdmpltallrnlgkmtadsvlapassevss
vcerltnekllkkarihpfhilvaletykkghgnklrwipdtsivealdnafyksfkl

Timeline for d1yvpb1:

• d1yvpb1 first appeared in SCOP 1.73
  
• d1yvpb1 appears in SCOPe 2.02
  
• d1yvpb1 appears in SCOPe 2.04
  
• d1yvpb1 appears in the current release, SCOPe 2.08