Lineage for d1yvpb1 (1yvp B:5-363)

  1. Root: SCOP 1.73
  2. 631650Class a: All alpha proteins [46456] (258 folds)
  3. 646820Fold a.118: alpha-alpha superhelix [48370] (23 superfamilies)
    multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
  4. 647632Superfamily a.118.25: TROVE domain-like [140864] (1 family) (S)
    consist of two superhelical sections arranged like a horse-shoe
  5. 647633Family a.118.25.1: TROVE domain-like [140865] (1 protein)
    Pfam PF05731
  6. 647634Protein 60-kda SS-aARo ribonucleoprotein [140866] (1 species)
  7. 647635Species African clawed frog (Xenopus laevis) [TaxId:8355] [140867] (3 PDB entries)
  8. 647638Domain d1yvpb1: 1yvp B:5-363 [124110]
    Other proteins in same PDB: d1yvpa2, d1yvpb2
    automatically matched to 1YVP A:5-363
    complexed with act, iu, mg

Details for d1yvpb1

PDB Entry: 1yvp (more details), 2.2 Å

PDB Description: Ro autoantigen complexed with RNAs
PDB Compounds: (B:) 60-kDa SS-A/Ro ribonucleoprotein

SCOP Domain Sequences for d1yvpb1:

Sequence, based on SEQRES records: (download)

>d1yvpb1 a.118.25.1 (B:5-363) 60-kda SS-aARo ribonucleoprotein {African clawed frog (Xenopus laevis) [TaxId: 8355]}
mdqtqplnekqvpnsegcyvwqvsdmnrlrrflcfgseggtyyieekklgqenaeallrl
iedgkgcevvqeiktfsqegraakqeptlfalavcsqcsdiktkqaafravpevcripth
lftfiqfkkdlkegmkcgmwgralrkavsdwyntkdalnlamavtkykqrngwshkdllr
lshikpanegltmvakyvskgwkevqeaykekelspetekvlkyleatervkrtkdelei
ihlideyrlvrehlltihlkskeiwksllqdmpltallrnlgkmtadsvlapassevssv
cerltnekllkkarihpfhilvaletykkghgnrgklrwipdtsivealdnafyksfkl

Sequence, based on observed residues (ATOM records): (download)

>d1yvpb1 a.118.25.1 (B:5-363) 60-kda SS-aARo ribonucleoprotein {African clawed frog (Xenopus laevis) [TaxId: 8355]}
mdqtqplnekqvpnsegcyvwqvsdmnrlrrflcfgseggtyyieekklgqenaeallrl
iedgkgcevvqeiktfsqegraakqeptlfalavcsqcsdiktkqaafravpevcripth
lftfiqfkkdlkegmkcgmwgralrkavsdwyntkdalnlamavtkykqrngwshkdllr
lshikpanegltmvakyvskgwkevqeaykekelspetekvlkyleatervkrtkdelei
ihlideyrlvrehlltihlkskeiwksllqdmpltallrnlgkmtadsvlapassevssv
cerltnekllkkarihpfhilvaletykkghgnklrwipdtsivealdnafyksfkl

SCOP Domain Coordinates for d1yvpb1:

Click to download the PDB-style file with coordinates for d1yvpb1.
(The format of our PDB-style files is described here.)

Timeline for d1yvpb1:

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Domains from same chain:
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d1yvpb2