SCOPe 2.01: Domain d1y5xd_: 1y5x D:

Lineage for d1y5xd_ (1y5x D:)

1. Root: SCOPe 2.01

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.20: tRNA-guanine transglycosylase [51713] (1 family)

5. Family c.1.20.1: tRNA-guanine transglycosylase [51714] (3 proteins)

6. Protein Queosine tRNA-guanine transglycosylase [51715] (2 species)
   contains zinc-binding subdomain

7. Species Zymomonas mobilis [TaxId:542] [51716] (51 PDB entries)
   Uniprot P28720

8. Domain d1y5xd_: 1y5x D: [122656]
   automated match to d1q2ra_
   protein/RNA complex; complexed with e89, zn

Details for d1y5xd_

PDB Entry: 1y5x, 2.1 Å

PDB Description: trna-guanine transglycosylase (tgt) in complex with 6-amino-4-[2-(4- methoxyphenyl)ethyl]-1,7-dihydro-8h-imidazo[4,5-g]quinazolin-8-one

PDB Compounds: (D:) Queuine tRNA-ribosyltransferase

SCOPe Domain Sequences for d1y5xd_:

Sequence, based on SEQRES records:

>d1y5xd_ c.1.20.1 (D:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
rprfsfsiaaregkartgtiemkrgvirtpafmpvgtaatvkalkpetvratgadiilgn
tyhlmlrpgaeriaklgglhsfmgwdrpiltdsggyqvmslssltkqseegvtfkshldg
srhmlspersieiqhllgsdivmafdectpypatpsraassmersmrwakrsrdafdsrk
eqaenaalfgiqqgsvfenlrqqsadalaeigfdgyavgglavgegqdemfrvldfsvpm
lpddkphylmgvgkpddivgavergidmfdcvlptrsgrngqaftwdgpinirnarfsed
lkpldsechcavcqkwsrayihhlirageilgamlmtehniafyqqlmqkirdsisegrf
sqfaqdfraryf

Sequence, based on observed residues (ATOM records):

>d1y5xd_ c.1.20.1 (D:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
rprfsfsiaaregkartgtiemkrgvirtpafmpvgtgadiilgntyhlmlrpgaeriak
lgglhsfmgwdrpiltdsggyqvmslssltkqseegvtfksrhmlspersieiqhllgsd
ivmafdectpypatpsraassmersmrwakrsrdafdsrkeqaenaalfgiqqgsvfenl
rqqsadalaeigfdgyavgglavgegqdemfrvldfsvpmlpddkphylmgvgkpddivg
avergidmfdcvlptrsgrngqaftwdgpinirnarfsedlkpldsechcavcqkwsray
ihhlirageilgamlmtehniafyqqlmqkirdsisegrfsqfaqdfraryf

Timeline for d1y5xd_:

• d1y5xd_ first appeared in SCOP 1.73, called d1y5xd1
  
• d1y5xd_ was called d1y5xd1 in SCOP 1.75
  
• d1y5xd_ appears in SCOPe 2.02
  
• d1y5xd_ appears in the current release, SCOPe 2.08