PDB-style files for SCOPe domains
The
ATOM and
HETATM records corresponding to each
SCOPe domain have been collated into
PDB-style coordinate files.
Header and remark records with more information
about the domain are also provided.
Access:
- The archive of all PDB-style files has been split into 5 parts because the file size exceeds 2 GB. To get all the PDB-style files for
Astral 2.01,
download
part 1 (1 GB), part 2 (1.1 GB), part 3 (887.4 MB), part 4 (1.3 GB) and part 5 (1.4 GB). Parts 1 - 3 contain files in which the data (excluding the REMARK comments) have not changed since 1.75. Parts 4 - 5 contain files in which the data and REMARK comments have both changed. All files will unpack into a single directory.
Bug fix: If you downloaded the files before 23 March 2012, part 6 contains files with corrected sccs identifiers for 400 domains (as described on the front page of the site); if you download the files after 23 March, you don't need this, since the fixes are integrated into parts 4 and 5 above, as well as the subsets below. Note that no coordinates changed in these corrected files, only the sccs identifiers.
-
If you only need smaller subsets of these files, you can instead
download archives containing the PDB-style
files corresponding to our two most commonly requested genetic
domain sequence subsets:
the 40% ID filtered subset (770.9 MB) and
the 95% ID filtered subset (1.3 GB).
-
If you have a set of older PDB-style
files, you may want to download only those files in which the data
have changed. A list showing the last Astral
version in which the data (not headers) in each PDB-style file was last updated is here:
pdbstyle-updated-2.01.txt
-
For direct access to all the files,
click here.
-
or use this form to retrieve the file for a single domain by either
the SCOPe sid or sun
identifiers:
Notes: