Lineage for d1y5xd_ (1y5x D:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2089551Superfamily c.1.20: tRNA-guanine transglycosylase [51713] (1 family) (S)
  5. 2089552Family c.1.20.1: tRNA-guanine transglycosylase [51714] (2 protein domains)
  6. 2089563Protein Queosine tRNA-guanine transglycosylase [51715] (3 species)
    contains zinc-binding subdomain
  7. 2089589Species Zymomonas mobilis [TaxId:542] [51716] (113 PDB entries)
    Uniprot P28720
  8. 2089674Domain d1y5xd_: 1y5x D: [122656]
    automated match to d1q2ra_
    protein/RNA complex; complexed with e89, zn

Details for d1y5xd_

PDB Entry: 1y5x (more details), 2.1 Å

PDB Description: tRNA-guanine Transglycosylase (TGT) in complex with 6-Amino-4-[2-(4-methoxyphenyl)ethyl]-1,7-dihydro-8H-imidazo[4,5-g]quinazolin-8-one
PDB Compounds: (D:) Queuine tRNA-ribosyltransferase

SCOPe Domain Sequences for d1y5xd_:

Sequence, based on SEQRES records: (download)

>d1y5xd_ c.1.20.1 (D:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
rprfsfsiaaregkartgtiemkrgvirtpafmpvgtaatvkalkpetvratgadiilgn
tyhlmlrpgaeriaklgglhsfmgwdrpiltdsggyqvmslssltkqseegvtfkshldg
srhmlspersieiqhllgsdivmafdectpypatpsraassmersmrwakrsrdafdsrk
eqaenaalfgiqqgsvfenlrqqsadalaeigfdgyavgglavgegqdemfrvldfsvpm
lpddkphylmgvgkpddivgavergidmfdcvlptrsgrngqaftwdgpinirnarfsed
lkpldsechcavcqkwsrayihhlirageilgamlmtehniafyqqlmqkirdsisegrf
sqfaqdfraryf

Sequence, based on observed residues (ATOM records): (download)

>d1y5xd_ c.1.20.1 (D:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
rprfsfsiaaregkartgtiemkrgvirtpafmpvgtgadiilgntyhlmlrpgaeriak
lgglhsfmgwdrpiltdsggyqvmslssltkqseegvtfksrhmlspersieiqhllgsd
ivmafdectpypatpsraassmersmrwakrsrdafdsrkeqaenaalfgiqqgsvfenl
rqqsadalaeigfdgyavgglavgegqdemfrvldfsvpmlpddkphylmgvgkpddivg
avergidmfdcvlptrsgrngqaftwdgpinirnarfsedlkpldsechcavcqkwsray
ihhlirageilgamlmtehniafyqqlmqkirdsisegrfsqfaqdfraryf

SCOPe Domain Coordinates for d1y5xd_:

Click to download the PDB-style file with coordinates for d1y5xd_.
(The format of our PDB-style files is described here.)

Timeline for d1y5xd_: