SCOPe 2.08: Domain d1sdna2: 1sdn A:3-262

Lineage for d1sdna2 (1sdn A:3-262)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
   contains a cluster of helices and an alpha+beta sandwich

4. Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families)

5. Family e.3.1.1: beta-Lactamase/D-ala carboxypeptidase [56602] (19 proteins)
   in the multi-domain class (e), this applies to domains with different numbers of (sub)domains than the most common domain
   

6. Protein Penicillin-binding protein 5, N-terminal domain [69875] (1 species)

7. Species Escherichia coli [TaxId:562] [69876] (11 PDB entries)

8. Domain d1sdna2: 1sdn A:3-262 [118950]
   Other proteins in same PDB: d1sdna1
   automated match to d1nj4a2
   complexed with hg; mutant

Details for d1sdna2

PDB Entry: 1sdn, 2.5 Å

PDB Description: crystal structure of a deacylation-defective mutant of penicillin- binding protein 5 modified by mercury

PDB Compounds: (A:) penicillin-binding protein 5

SCOPe Domain Sequences for d1sdna2:

Sequence, based on SEQRES records:

>d1sdna2 e.3.1.1 (A:3-262) Penicillin-binding protein 5, N-terminal domain {Escherichia coli [TaxId: 562]}
lniktmipgvpqidaesyilidynsgkvlaeqnadvrrdpasltkmmtsyvigqamkagk
fketdlvtigndawatgnpvfkgsslmflkpgmqvpvsqlirdinlqsgndacvamadfa
agsqdafvglmnsyvnalglknthfqtvhgldadgqyssardmaligqalirdvpneysi
ykekeftfngirqlnrngllwdnslnvdgiktghtdkagynlvasategqmrlisavmgg
rtfkgreaeskklltwgfrf

Sequence, based on observed residues (ATOM records):

>d1sdna2 e.3.1.1 (A:3-262) Penicillin-binding protein 5, N-terminal domain {Escherichia coli [TaxId: 562]}
lniktmipgvpqidaesyilidynsgkvlaeqnadvrrdpasltkmmtsyvigqamkagk
fketdlvtigndawatgsslmflkpgmqvpvsqlirdinlqsgndacvamadfaagsqda
fvglmnsyvnalglknthfqtvhgldadgqyssardmaligqalirdvpneysiykekef
tfngirqlnrngllwdnslnvdgiktghtdkagynlvasategqmrlisavmggrtfkgr
eaeskklltwgfrf

Timeline for d1sdna2:

• d1sdna2 first appeared in SCOP 1.73
  
• d1sdna2 appears in SCOPe 2.07