PDB entry 1sdn
View 1sdn on RCSB PDB site
Description: crystal structure of a deacylation-defective mutant of penicillin-binding protein 5 modified by mercury
Class: hydrolase
Keywords: peptidoglycan synthesis, penicllin-binding protein, dd-carboxypeptidase, hydrolase
Deposited on
2004-02-13, released
2005-02-22
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-06-09, with a file datestamp of
2009-06-05.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.174
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: penicillin-binding protein 5
Species: Escherichia coli [TaxId:562]
Gene: DACA, PFV, B0632, C0722, Z0777, ECS0670
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1sdna1, d1sdna2 - Heterogens: HG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1sdnA (A:)
ddlniktmipgvpqidaesyilidynsgkvlaeqnadvrrdpasltkmmtsyvigqamka
gkfketdlvtigndawatgnpvfkgsslmflkpgmqvpvsqlirdinlqsgndacvamad
faagsqdafvglmnsyvnalglknthfqtvhgldadgqyssardmaligqalirdvpney
siykekeftfngirqlnrngllwdnslnvdgiktghtdkagynlvasategqmrlisavm
ggrtfkgreaeskklltwgfrffetvnplkvgkefasepvwfgdsdraslgvdkdvylti
prgrmkdlkasyvlnsselhaplqknqvvgtinfqldgktieqrplvvlqeipegnfgdp
vid
Sequence, based on observed residues (ATOM records): (download)
>1sdnA (A:)
lniktmipgvpqidaesyilidynsgkvlaeqnadvrrdpasltkmmtsyvigqamkagk
fketdlvtigndawatgsslmflkpgmqvpvsqlirdinlqsgndacvamadfaagsqda
fvglmnsyvnalglknthfqtvhgldadgqyssardmaligqalirdvpneysiykekef
tfngirqlnrngllwdnslnvdgiktghtdkagynlvasategqmrlisavmggrtfkgr
eaeskklltwgfrffetvnplkvgkefasepvwfgdsdraslgvdkdvyltiprgrmkdl
kasyvlnsselhaplqknqvvgtinfqldgktieqrplvvlqeipeg