SCOPe 2.08: Domain d1vg9e1: 1vg9 E:3-444,E:558-606

Lineage for d1vg9e1 (1vg9 E:3-444,E:558-606)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.3: FAD/NAD(P)-binding domain [51904] (1 superfamily)
   core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander

4. Superfamily c.3.1: FAD/NAD(P)-binding domain [51905] (9 families)

5. Family c.3.1.3: GDI-like N domain [51931] (3 proteins)
   Similar to FAD-linked reductases in both domains but does not bind FAD

6. Protein Rab escort protein 1 [89546] (1 species)

7. Species Norway rat (Rattus norvegicus) [TaxId:10116] [89547] (3 PDB entries)
   Uniprot P37727

8. Domain d1vg9e1: 1vg9 E:3-444,E:558-606 [108616]
   Other proteins in same PDB: d1vg9a2, d1vg9b_, d1vg9c2, d1vg9d_, d1vg9e2, d1vg9f_, d1vg9g2, d1vg9h_
   complexed with gdp, k, mg, p33
   has additional insertions and/or extensions that are not grouped together

Details for d1vg9e1

PDB Entry: 1vg9, 2.5 Å

PDB Description: the crystal structures of the rep-1 protein in complex with c- terminally truncated rab7 protein

PDB Compounds: (E:) Rab proteins geranylgeranyltransferase component A 1

SCOPe Domain Sequences for d1vg9e1:

Sequence, based on SEQRES records:

>d1vg9e1 c.3.1.3 (E:3-444,E:558-606) Rab escort protein 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}
dnlpsdfdvivigtglpesiiaaacsrsgqrvlhvdsrsyyggnwasfsfsgllswlkey
qenndvvtensmwqeqileneeaiplsskdktiqhvevfcyasqdlhkdveeagalqknh
asvtsaqsaeaaeaaetsclptaveplsmgsceipaeqsqcpgpesspevndaeatgkke
nsdakssteepsenvpkvqdntetpkknritysqiikegrrfnidlvskllysrgllidl
liksnvsryaefknitrilafregtveqvpcsradvfnskqltmvekrmlmkfltfcvey
eehpdeyrayegttfseylktqkltpnlqyfvlhsiamtsettsctvdglkatkkflqcl
grygntpflfplygqgelpqcfcrmcavfggiyclrhsvqclvvdkesrkckavidqfgq
riiskhfiiedsylsentcsrvXsrdcyndlpsnvyvcsgpdsglgndnavkqaetlfqq
icpnedfcpapp

Sequence, based on observed residues (ATOM records):

>d1vg9e1 c.3.1.3 (E:3-444,E:558-606) Rab escort protein 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}
dnlpsdfdvivigtglpesiiaaacsrsgqrvlhvdsrsyyggnwasfsfsgllswlkey
qmwqeqileneeaiplsskdktiqhvevfcyasqdnritysqiikegrrfnidlvsklly
srgllidlliksnvsryaefknitrilafregtveqvpcsradvfnskqltmvekrmlmk
fltfcveyeehpdeyrayegttfseylktqkltpnlqyfvlhsiamtsettsctvdglka
tkkflqclgrygntpflfplygqgelpqcfcrmcavfggiyclrhsvqclvvdkesrkck
avidqfgqriiskhfiiedsylsentcsrvXsrdcyndlpsnvyvcsgpdsglgndnavk
qaetlfqqicpnedfcpapp

Timeline for d1vg9e1:

• d1vg9e1 first appeared in SCOP 1.69
  
• d1vg9e1 appears in SCOPe 2.07