Lineage for d1vg9c1 (1vg9 C:3-444,C:558-606)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2096453Fold c.3: FAD/NAD(P)-binding domain [51904] (1 superfamily)
    core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
  4. 2096454Superfamily c.3.1: FAD/NAD(P)-binding domain [51905] (9 families) (S)
  5. 2096865Family c.3.1.3: GDI-like N domain [51931] (3 protein domains)
    Similar to FAD-linked reductases in both domains but does not bind FAD
  6. 2096876Protein Rab escort protein 1 [89546] (1 species)
  7. 2096877Species Norway rat (Rattus norvegicus) [TaxId:10116] [89547] (3 PDB entries)
    Uniprot P37727
  8. 2096880Domain d1vg9c1: 1vg9 C:3-444,C:558-606 [108613]
    Other proteins in same PDB: d1vg9a2, d1vg9b_, d1vg9c2, d1vg9d_, d1vg9e2, d1vg9f_, d1vg9g2, d1vg9h_
    complexed with gdp, k, mg, p33

Details for d1vg9c1

PDB Entry: 1vg9 (more details), 2.5 Å

PDB Description: the crystal structures of the rep-1 protein in complex with c- terminally truncated rab7 protein
PDB Compounds: (C:) Rab proteins geranylgeranyltransferase component A 1

SCOPe Domain Sequences for d1vg9c1:

Sequence, based on SEQRES records: (download)

>d1vg9c1 c.3.1.3 (C:3-444,C:558-606) Rab escort protein 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}
dnlpsdfdvivigtglpesiiaaacsrsgqrvlhvdsrsyyggnwasfsfsgllswlkey
qenndvvtensmwqeqileneeaiplsskdktiqhvevfcyasqdlhkdveeagalqknh
asvtsaqsaeaaeaaetsclptaveplsmgsceipaeqsqcpgpesspevndaeatgkke
nsdakssteepsenvpkvqdntetpkknritysqiikegrrfnidlvskllysrgllidl
liksnvsryaefknitrilafregtveqvpcsradvfnskqltmvekrmlmkfltfcvey
eehpdeyrayegttfseylktqkltpnlqyfvlhsiamtsettsctvdglkatkkflqcl
grygntpflfplygqgelpqcfcrmcavfggiyclrhsvqclvvdkesrkckavidqfgq
riiskhfiiedsylsentcsrvXsrdcyndlpsnvyvcsgpdsglgndnavkqaetlfqq
icpnedfcpapp

Sequence, based on observed residues (ATOM records): (download)

>d1vg9c1 c.3.1.3 (C:3-444,C:558-606) Rab escort protein 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}
dnlpsdfdvivigtglpesiiaaacsrsgqrvlhvdsrsyyggnwasfsfsgllswlkey
qenndvvtensmwqeqileneeaiplsskdktiqhvevfcyasqdritysqiikegrrfn
idlvskllysrgllidlliksnvsryaefknitrilafregtveqvpcsradvfnskqlt
mvekrmlmkfltfcveyeehpdeyrayegttfseylktqkltpnlqyfvlhsiamtsett
sctvdglkatkkflqclgrygntpflfplygqgelpqcfcrmcavfggiyclrhsvqclv
vdkesrkckavidqfgqriiskhfiiedsylsentcsrvXsrdcyndlpsnvyvcsgpds
glgndnavkqaetlfqqicpnedfcpapp

SCOPe Domain Coordinates for d1vg9c1:

Click to download the PDB-style file with coordinates for d1vg9c1.
(The format of our PDB-style files is described here.)

Timeline for d1vg9c1: