SCOPe 2.06: Domain d1sjda1: 1sjd A:126-367

Lineage for d1sjda1 (1sjd A:126-367)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families)
   binds metal ion (magnesium or manganese) in conserved site inside barrel
   N-terminal alpha+beta domain is common to this superfamily

5. Family c.1.11.2: D-glucarate dehydratase-like [51609] (15 proteins)

6. Protein N-acylamino acid racemase [110372] (4 species)

7. Species Amycolatopsis sp. [TaxId:37632] [110373] (4 PDB entries)
   Uniprot Q44244 # similar activity to a remotely related O-succinylbenzoate synthase from E. coli

8. Domain d1sjda1: 1sjd A:126-367 [105632]
   Other proteins in same PDB: d1sjda2, d1sjdb2, d1sjdc2, d1sjdd2
   complexed with npg

Details for d1sjda1

PDB Entry: 1sjd, 1.87 Å

PDB Description: x-ray structure of o-succinylbenzoate synthase complexed with n-succinyl phenylglycine

PDB Compounds: (A:) N-acylamino acid racemase

SCOPe Domain Sequences for d1sjda1:

Sequence; same for both SEQRES and ATOM records:

>d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]}
vrdsvpcgvsvgimdtipqlldvvggyldegyvriklkiepgwdvepvravrerfgddvl
lqvdantaytlgdapqlarldpfglllieqpleeedvlghaelarriqtpicldesivsa
raaadaiklgavqivnikpgrvggylearrvhdvcaahgipvwcggmietglgraanval
aslpnftlpgdtsasdrfyktditepfvlsgghlpvptgpglgvapipelldevttakvw
ig

Timeline for d1sjda1:

• d1sjda1 first appeared in SCOP 1.69
  
• d1sjda1 appears in SCOPe 2.05
  
• d1sjda1 appears in SCOPe 2.07
  
• d1sjda1 appears in the current release, SCOPe 2.08