Lineage for Family c.1.11.2: D-glucarate dehydratase-like

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2089714Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2098969Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families) (S)
    binds metal ion (magnesium or manganese) in conserved site inside barrel
    N-terminal alpha+beta domain is common to this superfamily
  5. 2099101Family c.1.11.2: D-glucarate dehydratase-like [51609] (15 proteins)

Proteins:

  1. 2099102beta-Methylaspartase [69400] (2 species)
    1. 2099103Species Citrobacter amalonaticus [TaxId:35703] [69402] (2 PDB entries)
    2. 2099108Species Clostridium tetanomorphum [TaxId:1553] [69401] (2 PDB entries)
  2. 2099113Chlormuconate cycloisomerase [51619] (2 species)
    1. 2099114Species Alcaligenes eutrophus [TaxId:106590] [51620] (1 PDB entry)
    2. 2099116Species Pseudomonas sp. p51 [TaxId:65067] [102096] (1 PDB entry)
  3. 2099118D-glucarate dehydratase [51610] (2 species)
    1. 2099119Species Escherichia coli [TaxId:562] [51612] (7 PDB entries)
    2. 2099144Species Pseudomonas putida [TaxId:303] [51611] (1 PDB entry)
  4. 2099146D-mannonate dehydratase [267664] (1 species)
  5. 2099152Hypothetical protein Atu3453 [102097] (1 species)
  6. 2099155Hypothetical protein Bll6730 [117384] (1 species)
  7. 2099159Hypothetical protein YitF [141844] (1 species)
  8. 2099171L-Ala-D/L-Glu epimerase [69397] (2 species)
    1. 2099172Species Bacillus subtilis [TaxId:1423] [69399] (2 PDB entries)
      Uniprot O34508
    2. 2099185Species Escherichia coli [TaxId:562] [69398] (1 PDB entry)
  9. 2099187Mandelate racemase [51617] (3 species)
    1. 2099188Species Clostridium beijerinckii [TaxId:290402] [267745] (2 PDB entries)
    2. 2099193Species Dickeya dadantii [TaxId:579405] [267743] (1 PDB entry)
    3. 2099202Species Pseudomonas putida [TaxId:303] [51618] (6 PDB entries)
  10. 2099209Muconate-lactonizing enzyme [51615] (1 species)
  11. 2099222N-acylamino acid racemase [110372] (4 species)
    1. 2099223Species Amycolatopsis sp. [TaxId:37632] [110373] (4 PDB entries)
      Uniprot Q44244 # similar activity to a remotely related O-succinylbenzoate synthase from E. coli
    2. 2099240Species Deinococcus radiodurans [TaxId:1299] [110374] (5 PDB entries)
      Uniprot Q9RYA6
    3. 2099261Species Enterococcus faecalis [TaxId:1351] [117382] (1 PDB entry)
      Uniprot Q838J7; EF0450; protein assignment by sequence similarity
    4. 2099264Species Listeria innocua [TaxId:1642] [117383] (1 PDB entry)
      Uniprot Q927X3; Lin2664; protein assignment by sequence similarity
  12. 2099267O-succinylbenzoate synthase [51613] (1 species)
  13. 2099276Putative dehydratase protein STM2273 [141846] (2 species)
    1. 2099277Species Salmonella enterica [TaxId:90371] [226347] (1 PDB entry)
    2. 2099286Species Salmonella typhimurium [TaxId:90371] [141847] (1 PDB entry)
      Uniprot Q8ZNH1 123-400
  14. 2099289RTS beta protein [117386] (1 species)
  15. 2099295automated matches [226997] (13 species)
    not a true protein
    1. 2099296Species Acidaminococcus sp. [TaxId:563191] [234735] (1 PDB entry)
    2. 2099299Species Actinobacillus succinogenes [TaxId:339671] [226437] (1 PDB entry)
    3. 2099304Species Agrobacterium tumefaciens [TaxId:176299] [226506] (6 PDB entries)
    4. 2099316Species Amycolatopsis sp. [TaxId:37632] [326207] (5 PDB entries)
    5. Species Bradyrhizobium japonicum [TaxId:375] [255123] (2 PDB entries)
    6. 2099356Species Cupriavidus necator [TaxId:106590] [311123] (1 PDB entry)
    7. 2099359Species Escherichia coli [TaxId:444449] [233282] (2 PDB entries)
    8. 2099365Species Pantoea ananatis [TaxId:706191] [267884] (1 PDB entry)
    9. 2099368Species Pectobacterium carotovorum [TaxId:561230] [267927] (1 PDB entry)
    10. 2099373Species Pseudomonas putida [TaxId:303] [228631] (6 PDB entries)
    11. 2099387Species Salmonella enterica [TaxId:550537] [267890] (3 PDB entries)
    12. 2099402Species Salmonella typhimurium [TaxId:602] [225624] (1 PDB entry)
    13. 2099404Species Vibrionales bacterium [TaxId:391574] [267878] (2 PDB entries)

More info for Family c.1.11.2: D-glucarate dehydratase-like

Timeline for Family c.1.11.2: D-glucarate dehydratase-like: