PDB entry 6o5e

View 6o5e on RCSB PDB site
Description: Crystal structure of the Vitronectin hemopexin-like domain
Class: cell adhesion
Keywords: integrin ligand, hemopexin-like domain, beta-propeller, serum protein, CELL ADHESION
Deposited on 2019-03-01, released 2019-09-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-09-18, with a file datestamp of 2019-09-13.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Vitronectin
    Species: Homo sapiens [TaxId:9606]
    Gene: VTN
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04004 (1-End)
      • initiating methionine (0)
      • engineered mutation (27)
      • engineered mutation (62)
    • Uniprot P04004 (Start-163)
    • Uniprot P04004 (164-203)
    Domains in SCOPe 2.07: d6o5ea_
  • Chain 'B':
    Compound: Vitronectin
    Species: Homo sapiens [TaxId:9606]
    Gene: VTN
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04004 (1-End)
      • engineered mutation (27)
    • Uniprot P04004 (Start-163)
    • Uniprot P04004 (164-203)
    Domains in SCOPe 2.07: d6o5eb_
  • Heterogens: NA, CL, SO4, IMD, NO3, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6o5eA (A:)
melcsgkpfdaftdlkngslfafrgqysyeldekavrpgypklirdvwgiegpidaaftr
insqgktylfkgsqywrfedgvldpdyprnisdgfdgipdnvdaalalpahsysgrervy
ffkgkqyweyqfqrtsagtrqpqfisrdwhgvpgqvdaamagrisvfffsgdkyyrvnlr
trrvdtvdppyprsiaqywlgcpa

    Sequence, based on observed residues (ATOM records): (download) 
    >6o5eA (A:)
melcsgkpfdaftdlkngslfafrgqysyeldekavrpgypklirdvwgiegpidaaftr
insqgktylfkgsqywrfedgvldpdyprnisdgfdgipdnvdaalalpervyffkgkqy
weyqfqpqfisrdwhgvpgqvdaamagrisvfffsgdkyyrvnlrtrrvdtvdppyprsi
aqywlgcpa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6o5eB (B:)
melcsgkpfdaftdlkngslfafrgqysyeldekavrpgypklirdvwgiegpidaaftr
insqgktylfkgsqywrfedgvldpdyprnisdgfdgipdnvdaalalpahsysgrervy
ffkgkqyweyqfqrtsagtrqpqfisrdwhgvpgqvdaamagrisvfffsgdkyyrvnlr
trrvdtvdppyprsiaqywlgcpa

    Sequence, based on observed residues (ATOM records): (download) 
    >6o5eB (B:)
elcsgkpfdaftdlkngslfafrgqysyeldpklirdvwgiegpidaaftrigktylfkg
sqywrfedgvldpdyprnisdgfdgipdnvdaalalpervyffkgkqyweyqfqpqfisr
dwhgvpgqvdaamagrisvfffsgdkyyrvnlrtrrvdtvdppyprsiaqywlgcpa