SCOPe 2.08: Structural Classification of Proteins

PDB entry 5w75

View 5w75 on RCSB PDB site
Description: Crystal Structure of Reconstructed Bacterial Elongation Factor Node 168
Class: translation
Keywords: ancestral gene reconstruction, thermostability, EF-Tu, ASR, TRANSLATION
Deposited on 2017-06-19, released 2018-04-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: elongation factor tu
Species: Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) [TaxId:309803]
Gene: tuf, CTN_0991
Database cross-references and differences (RAF-indexed):
- Uniprot B9K884 (0-390)
  - conflict (12)
  - conflict (118)
  - conflict (320)
  - conflict (332)
  - expression tag (391)
Domains in SCOPe 2.08: d5w75a1, d5w75a2, d5w75a3, d5w75a4
Chain 'B':
Compound: elongation factor tu
Species: Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) [TaxId:309803]
Gene: tuf, CTN_0991
Database cross-references and differences (RAF-indexed):
- Uniprot B9K884 (0-390)
  - conflict (12)
  - conflict (118)
  - conflict (320)
  - conflict (332)
  - expression tag (391)
Domains in SCOPe 2.08: d5w75b1, d5w75b2, d5w75b3, d5w75b4
Chain 'C':
Compound: elongation factor tu
Species: Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) [TaxId:309803]
Gene: tuf, CTN_0991
Database cross-references and differences (RAF-indexed):
- Uniprot B9K884 (0-390)
  - conflict (12)
  - conflict (118)
  - conflict (320)
  - conflict (332)
  - expression tag (391)
Domains in SCOPe 2.08: d5w75c1, d5w75c2, d5w75c3, d5w75c4
Chain 'D':
Compound: elongation factor tu
Species: Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) [TaxId:309803]
Gene: tuf, CTN_0991
Database cross-references and differences (RAF-indexed):
- Uniprot B9K884 (0-390)
  - conflict (12)
  - conflict (118)
  - conflict (320)
  - conflict (332)
  - expression tag (391)
Domains in SCOPe 2.08: d5w75d1, d5w75d2, d5w75d3, d5w75d4
Heterogens: GDP, MG, SO4, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>5w75A (A:)
tkphvnvgtighvdhgkstltaaitkylslkglaqyvpydqidkapeekargitinithv
eyetekrhyahidcpghadyiknmitgaaqmdgailvvaatdgpmpqtrehvllarqvgv
pymivfinktdmvddpelielvemevrdllsqyeypgdevpvikgsalkaleapddpnhe
aykpiqelldamdnyipdpqrdvdkpflmpiedvfsitgrgtvvtgriergrirpgdeve
iiglsyeirktvvtsvemfrkeldegiagdnvgcllrgidkdevergqvlaapgsikphk
rfkaevyvlkkeeggrhtpffkgykpqfyirttdvtgeivlpegvemvmpgdhvemeiel
iypvaiekgqrfaireggrtvgagvvteviel

Sequence, based on observed residues (ATOM records): (download)

>5w75A (A:)
tkphvnvgtighvdhgkstltaaitkylslkglaqyvpydqidkapeekargitinithv
eyetekrhyahidcpghadyiknmitgaaqmdgailvvaatdgpmpqtrehvllarqvgv
pymivfinktdmvddpelielvemevrdllsqyeypgdevpvikgsalkaleheaykpiq
elldamdnyipdpqrdvdkpflmpiedvfsitgrgtvvtgriergrirpgdeveiiglei
rktvvtsvemfrkeldegiagdnvgcllrgidkdevergqvlaapgsikphkrfkaevyv
lkkeeggrhtpffkgykpqfyirttdvtgeivlpegvemvmpgdhvemeieliypvaiek
gqrfaireggrtvgagvvteviel

Chain 'B':
Sequence, based on SEQRES records: (download)

>5w75B (B:)
tkphvnvgtighvdhgkstltaaitkylslkglaqyvpydqidkapeekargitinithv
eyetekrhyahidcpghadyiknmitgaaqmdgailvvaatdgpmpqtrehvllarqvgv
pymivfinktdmvddpelielvemevrdllsqyeypgdevpvikgsalkaleapddpnhe
aykpiqelldamdnyipdpqrdvdkpflmpiedvfsitgrgtvvtgriergrirpgdeve
iiglsyeirktvvtsvemfrkeldegiagdnvgcllrgidkdevergqvlaapgsikphk
rfkaevyvlkkeeggrhtpffkgykpqfyirttdvtgeivlpegvemvmpgdhvemeiel
iypvaiekgqrfaireggrtvgagvvteviel

Sequence, based on observed residues (ATOM records): (download)

>5w75B (B:)
tkphvnvgtighvdhgkstltaaitkylslkglaqyvpydqidkapeekargitinithv
eyetekrhyahidcpghadyiknmitgaaqmdgailvvaatdgpmpqtrehvllarqvgv
pymivfinktdmvddpelielvemevrdllsqyeypgdevpvikgsalkaleheaykpiq
elldamdnyipdpqrdvdkpflmpiedvfsitgrgtvvtgriergrirpgdeveiiglse
irktvvtsvemfrkeldegiagdnvgcllrgidkdevergqvlaapgsikphkrfkaevy
vlkkeeggrhtpffkgykpqfyirttdvtgeivlpegvemvmpgdhvemeieliypvaie
kgqrfaireggrtvgagvvteviel

Chain 'C':
Sequence, based on SEQRES records: (download)

>5w75C (C:)
tkphvnvgtighvdhgkstltaaitkylslkglaqyvpydqidkapeekargitinithv
eyetekrhyahidcpghadyiknmitgaaqmdgailvvaatdgpmpqtrehvllarqvgv
pymivfinktdmvddpelielvemevrdllsqyeypgdevpvikgsalkaleapddpnhe
aykpiqelldamdnyipdpqrdvdkpflmpiedvfsitgrgtvvtgriergrirpgdeve
iiglsyeirktvvtsvemfrkeldegiagdnvgcllrgidkdevergqvlaapgsikphk
rfkaevyvlkkeeggrhtpffkgykpqfyirttdvtgeivlpegvemvmpgdhvemeiel
iypvaiekgqrfaireggrtvgagvvteviel

Sequence, based on observed residues (ATOM records): (download)

>5w75C (C:)
tkphvnvgtighvdhgkstltaaitkylslkglaqyvpydqidkapeekargitinithv
eyetekrhyahidcpghadyiknmitgaaqmdgailvvaatdgpmpqtrehvllarqvgv
pymivfinktdmvddpelielvemevrdllsqyeypgdevpvikgsalkaleanheaykp
iqelldamdnyipdpqrdvdkpflmpiedvfsitgrgtvvtgriergrirpgdeveiigl
seirktvvtsvemfrkeldegiagdnvgcllrgidkdevergqvlaapgsikphkrfkae
vyvlkkeeggrhtpffkgykpqfyirttdvtgeivlpegvemvmpgdhvemeieliypva
iekgqrfaireggrtvgagvvteviel

Chain 'D':
Sequence, based on SEQRES records: (download)

>5w75D (D:)
tkphvnvgtighvdhgkstltaaitkylslkglaqyvpydqidkapeekargitinithv
eyetekrhyahidcpghadyiknmitgaaqmdgailvvaatdgpmpqtrehvllarqvgv
pymivfinktdmvddpelielvemevrdllsqyeypgdevpvikgsalkaleapddpnhe
aykpiqelldamdnyipdpqrdvdkpflmpiedvfsitgrgtvvtgriergrirpgdeve
iiglsyeirktvvtsvemfrkeldegiagdnvgcllrgidkdevergqvlaapgsikphk
rfkaevyvlkkeeggrhtpffkgykpqfyirttdvtgeivlpegvemvmpgdhvemeiel
iypvaiekgqrfaireggrtvgagvvteviel

Sequence, based on observed residues (ATOM records): (download)

>5w75D (D:)
tkphvnvgtighvdhgkstltaaitkylslkglaqyvpydqidkapeekargitinithv
eyetekrhyahidcpghadyiknmitgaaqmdgailvvaatdgpmpqtrehvllarqvgv
pymivfinktdmvddpelielvemevrdllsqyeypgdevpvikgsalkaleanheaykp
iqelldamdnyipdpqrdvdkpflmpiedvfsitgrgtvvtgriergrirpgdeveiigl
seirktvvtsvemfrkeldegiagdnvgcllrgidkdevergqvlaapgsikphkrfkae
vyvlkkeeggrhtpffkgykpqfyirttdvtgeivlpegvemvmpgdhvemeieliypva
iekgqrfaireggrtvgagvvteviel