PDB entry 5l8r

View 5l8r on RCSB PDB site
Description: The structure of plant photosystem I super-complex at 2.6 angstrom resolution.
Class: oxidoreductase
Keywords: photosynthesis, membrane complex, chlorophyll, light harvesting, oxidoreductase
Deposited on 2016-06-08, released 2017-03-15
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-29, with a file datestamp of 2017-11-24.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: Lhca1
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • PDB 5L8R (0-192)
    Domains in SCOPe 2.07: d5l8r1_
  • Chain '2':
    Compound: Chlorophyll a-b binding protein, chloroplastic
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5l8r2_
  • Chain '3':
    Compound: Chlorophyll a-b binding protein 3, chloroplastic
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5l8r3_
  • Chain '4':
    Compound: chlorophyll a-b binding protein p4, chloroplastic
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9SQL2 (0-197)
      • conflict (37)
      • conflict (76)
      • conflict (97)
    Domains in SCOPe 2.07: d5l8r4_
  • Chain 'A':
    Compound: photosystem I p700 chlorophyll a apoprotein a1
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P05310 (Start-757)
      • conflict (116)
      • conflict (175)
      • conflict (193)
      • conflict (219)
      • conflict (370)
      • conflict (373)
      • conflict (377)
      • conflict (389)
      • conflict (508)
      • conflict (521)
      • conflict (524)
      • conflict (607)
      • conflict (626)
      • conflict (638)
    Domains in SCOPe 2.07: d5l8ra_
  • Chain 'B':
    Compound: photosystem I p700 chlorophyll a apoprotein a2
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5l8rb_
  • Chain 'C':
    Compound: photosystem I iron-sulfur center
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5l8rc_
  • Chain 'D':
    Compound: PsaD
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • PDB 5L8R (0-142)
    Domains in SCOPe 2.07: d5l8rd_
  • Chain 'E':
    Compound: Putative uncharacterized protein
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • Uniprot E1C9K6 (2-65)
      • expression tag (0-1)
      • conflict (15)
      • conflict (61-62)
      • conflict (65)
    Domains in SCOPe 2.07: d5l8re1, d5l8re2
  • Chain 'F':
    Compound: Photosystem I reaction center subunit III
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0M3KL12 (0-153)
      • conflict (2)
      • conflict (9)
      • conflict (30)
      • conflict (33)
      • conflict (56)
      • conflict (110)
      • conflict (126)
    Domains in SCOPe 2.07: d5l8rf_
  • Chain 'G':
    Compound: PsaG
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • PDB 5L8R (0-96)
  • Chain 'H':
    Compound: Photosystem I reaction center subunit VI
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0M3KL10 (0-85)
      • conflict (7)
      • conflict (26-27)
      • conflict (63)
      • conflict (73)
      • conflict (81)
      • expression tag (86-87)
  • Chain 'I':
    Compound: Photosystem I reaction center subunit VIII
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Photosystem I reaction center subunit IX
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D5MAL3 (0-41)
      • conflict (31)
    Domains in SCOPe 2.07: d5l8rj_
  • Chain 'K':
    Compound: Photosystem I reaction center subunit X psaK
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • Uniprot E1C9L3 (0-79)
      • conflict (39)
  • Chain 'L':
    Compound: Putative uncharacterized protein
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • Uniprot E1C9L1 (0-156)
      • conflict (3)
      • conflict (25)
      • conflict (34)
      • conflict (40)
      • conflict (54)
      • conflict (89)
      • conflict (103)
      • conflict (118)
      • conflict (147)
  • Heterogens: LUT, BCR, CLA, CHL, LHG, LMG, XAT, LMT, CA, DGD, CL0, SF4, PQN, ZEX, HOH

PDB Chain Sequences:

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5l8r1 (1:)
dwmpgqprpsyldgsapgdfgfdplrlgevpenlerfkeselihcrwamlavpgilvpea
lglgnwvkaqewaalpggqatylgnpvpwgtlptilvieflsiafvehqrsmekdpekkk
ypggafdplgyskdpkkfheykikevkngrlallafvgicvqqsaypgtgplenlathla
dpwhntignvlip

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >5l8r2 (2:)
masacassaiaavaistpssqkngspsgtskaflgrklkvnsstaspsrvrststvctva
epdrplwfpgstpppwldgslpgdfgfdplglgsdpeslrwnvqaelvhsrwamlgaagi
fipefltklgilntpswytageqeyftdtttlfivelvfigwaegrrwadilnpgcvntd
pifpnnkltgtdvgypgglwfdplgwgsaspqklkelrtkeikngrlamlavmgawfqhi
ytgtgpidnlfahladpghatifaaftpk

    Sequence, based on observed residues (ATOM records): (download) 
    >5l8r2 (2:)
tvaepdrplwfpgstpppwldgslpgdfgfdplglgsdpeslrwnvqaelvhsrwamlga
agifipefltklgilntpswytageqeyftdtttlfivelvfigwaegrrwadilnpgcv
ntdpifpnnkltgtdvgypgglwfdplgwgsaspqklkelrtkeikngrlamlavmgawf
qhiytgtgpidnlfahladpghatifaa

  • Chain '3':
    Sequence, based on SEQRES records: (download) 
    >5l8r3 (3:)
matqalvssssltfaaeavrqsfrarslpssvgcsrkglvraaatppvkqggvdrplwfa
skqslsyldgslpgdygfdplglsdpegtggfieprwlaygevingrfamlgavgaiape
ylgkvglipqetalawfqtgvippagtynywadnytlfvlemalmgfaehrrfqdwakpg
smgkqyflglekgfggsgnpaypggpffnplgfgkdekslkelklkevkngrlamlailg
yfiqglvtgvgpyqnlldhvadpvnnnvltslkfh

    Sequence, based on observed residues (ATOM records): (download) 
    >5l8r3 (3:)
rplwfaskqslsyldgslpgdygfdplglsdpegtggfieprwlaygevingrfamlgav
gaiapeylgkvglipqetalawfqtgvippagtynywadnytlfvlemalmgfaehrrfq
dwakpgsmgkqyflglekgfggsgnpaypggpffnplgfgkdekslkelklkevkngrla
mlailgyfiqglvtgvgpyqnlldhvadpvnnnvltslkfh

  • Chain '4':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5l8r4 (4:)
kkgewlpglaspgyltgslpgdngfdplglaedpenlkwfvqaelvngrwamlgvagmll
pevftsigiinvpkwydagkeeyfassstlfviefilfhyveirrwqdiknpgsvnqdpi
fkqyslpagevgypggifnplnfaptleakekeiangrlamlaflgfiiqhnvtgkgpfd
nllqhisdpwhntivqtl

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5l8rA (A:)
miirspepkvqiladpevkilvdrdpiktsfeqwakpghfsrtiakgpdtttwiwnlhad
ahdfdshtsdleeisrkvfsahfgqlsiiflwlsgmyfhgarfsnyeawlndpthirpsa
qvvwpivgqeilngdvgggfrgiqitsgffqiwrasgitselqlyctaigalvfaalmlf
agwfhyhkaapklvwfqdvesmlnhhlagllglgslswaghqvhvslpinqflnagvdpk
eiplphefilnrdllaqlypsfaegatpfftlnwskyadfltfrggldpltgglwltdia
hhhlaiailfliaghmyrtnwgighgikdileahkgpftgqghkglyeilttswhaqlsi
nlamlgsltiivahhmyamppypylatdygtqlslfthhmwiggflivgaaahaaifmvr
dydpttryndlldrvlrhrdaiishlnwvciflgfhsfglyihndtmsalgrpqdmfsdt
aiqlqpvfaqwiqnthalapgttapgattstsltwgggdlvsvggkvallpiplgtadfl
vhhihaftihvtvlillkgvlfarssrlipdkanlgfrfpcdgpgrggtcqvsawdhvfl
glfwmynaisvvifhfswkmqsdvwgsindqgvvthitggnfaqssitingwlrdflwaq
asqviqsygsslsayglfflgahfvwafslmflfsgrgywqeliesivwahnklkvapat
qpralsivqgravgvthyllggiattwafflariiavg

    Sequence, based on observed residues (ATOM records): (download) 
    >5l8rA (A:)
pevkilvdrdpiktsfeqwakpghfsrtiakgpdtttwiwnlhadahdfdshtsdleeis
rkvfsahfgqlsiiflwlsgmyfhgarfsnyeawlndpthirpsaqvvwpivgqeilngd
vgggfrgiqitsgffqiwrasgitselqlyctaigalvfaalmlfagwfhyhkaapklvw
fqdvesmlnhhlagllglgslswaghqvhvslpinqflnagvdpkeiplphefilnrdll
aqlypsfaegatpfftlnwskyadfltfrggldpltgglwltdiahhhlaiailfliagh
myrtnwgighgikdileahkgpftgqghkglyeilttswhaqlsinlamlgsltiivahh
myamppypylatdygtqlslfthhmwiggflivgaaahaaifmvrdydpttryndlldrv
lrhrdaiishlnwvciflgfhsfglyihndtmsalgrpqdmfsdtaiqlqpvfaqwiqnt
halapgttapgattstsltwgggdlvsvggkvallpiplgtadflvhhihaftihvtvli
llkgvlfarssrlipdkanlgfrfpcdgpgrggtcqvsawdhvflglfwmynaisvvifh
fswkmqsdvwgsindqgvvthitggnfaqssitingwlrdflwaqasqviqsygsslsay
glfflgahfvwafslmflfsgrgywqeliesivwahnklkvapatqpralsivqgravgv
thyllggiattwafflariiavg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5l8rB (B:)
malrfprfsqglaqdpttrriwfgiatahdfeshdditegrlyqnifashfgqlaiiflw
tsgnlfhvawqgnfeawvqdplhvrpiahaiwdphfgqpaveaftrggalgpvniaysgv
yqwwytiglrtnedlytgaifllflsfisllagwlhlqpkwkpsvswfknaesrlnhhls
glfgvsslawaghlvhvaipgsrgeyvrwnnflsvlphpqglgplftgqwnlyaqnpdss
nhlfstsqgagtailtllggfhpqtqslwltdmahhhlaiailfligghmyrtnfgighs
ikyileahippggrlgrghkglydtinnsihfqlglalaslgvitslvaqhmyslpayaf
iaqdfttqaalythhqyiagfimtgafahgaiffirdynpeqnadnvlarmlehkeaiis
hlswaslflgfhtlglyvhndvmlafgtpekqiliepifaqwiqsahgktsygfdvllss
tnspalnagrsiwlpgwlnainensnslfltigpgdflvhhaialglhtttlilvkgald
argsklmpdkkdfgysfpcdgpgrggtcdisawdafylavfwmlntigwvtfywhwkhit
lwqgnvsqfnesstylmgwlrdylwlnssqlingynpfgmnslsvwawmflfghlvwatg
fmfliswrgywqelietlawahertplanlirwrdkpvalsivqarlvglvhfsvgyift
yaafliastsgkfg

    Sequence, based on observed residues (ATOM records): (download) 
    >5l8rB (B:)
alrfprfsqglaqdpttrriwfgiatahdfeshdditegrlyqnifashfgqlaiiflwt
sgnlfhvawqgnfeawvqdplhvrpiahaiwdphfgqpaveaftrggalgpvniaysgvy
qwwytiglrtnedlytgaifllflsfisllagwlhlqpkwkpsvswfknaesrlnhhlsg
lfgvsslawaghlvhvaipgsrgeyvrwnnflsvlphpqglgplftgqwnlyaqnpdssn
hlfstsqgagtailtllggfhpqtqslwltdmahhhlaiailfligghmyrtnfgighsi
kyileahippggrlgrghkglydtinnsihfqlglalaslgvitslvaqhmyslpayafi
aqdfttqaalythhqyiagfimtgafahgaiffirdynpeqnadnvlarmlehkeaiish
lswaslflgfhtlglyvhndvmlafgtpekqiliepifaqwiqsahgktsygfdvllsst
nspalnagrsiwlpgwlnainensnslfltigpgdflvhhaialglhtttlilvkgalda
rgsklmpdkkdfgysfpcdgpgrggtcdisawdafylavfwmlntigwvtfywhwkhitl
wqgnvsqfnesstylmgwlrdylwlnssqlingynpfgmnslsvwawmflfghlvwatgf
mfliswrgywqelietlawahertplanlirwrdkpvalsivqarlvglvhfsvgyifty
aafliastsgkfg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5l8rC (C:)
mshsvkiydtcigctqcvracptdvlemipwggckakqiasaprtedcvgckrcesacpt
dflsvrvylwhettrsmglay

    Sequence, based on observed residues (ATOM records): (download) 
    >5l8rC (C:)
shsvkiydtcigctqcvracptdvlemipwggckakqiasaprtedcvgckrcesacptd
flsvrvylwhettrsmglay

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5l8rD (D:)
gftppeldpntpspifggstggllrkaqveefyvitwespkeqifemptggaaimregpn
llklarkeqclalgtrlrskykikyqfyrvfpsgevqylhpkdgvypekvnpgrqgvgvn
frsigknvspievkftgkqpydl

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5l8rE (E:)
ppigpkrgakvkilrqesywykgtgsvvavdqdpntrypvvvrfnkvnyanvstnnyald
eveevk

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5l8rF (F:)
diagltpckdskqfakrekqsikklesslklyapdsapalainatiektkrrfdnygkqg
llcgadglphlivsgdqrhwgefitpgilflyiagwigwvgrsyliairddkkptqkeii
idvplatrlvfrgfswpiaayrellngelvakdv

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5l8rJ (J:)
mrdlktylsvapvastlwfaalagllieinrffpdaltfpff

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.