PDB entry 4udu
View 4udu on RCSB PDB site
Description: Crystal structure of staphylococcal enterotoxin E in complex with a T cell receptor
Class: immune system
Keywords: immune system, superantigen, t cell receptor, major histocompatibility complex
Deposited on
2014-12-11, released
2015-06-24
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-03-15, with a file datestamp of
2017-03-10.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: t cell receptor alpha chain, T-cell receptor alpha chain c region
Species: Homo sapiens [TaxId:9606]
Gene: TRAC, TCRA
Database cross-references and differences (RAF-indexed):
- PDB 4UDU (Start-111)
- engineered mutation (159)
- Uniprot P01848 (112-End)
Domains in SCOPe 2.08: d4udua1, d4udua2 - Chain 'B':
Compound: protein trbv7-9, T-cell receptor beta-2 chain c region
Species: Homo sapiens [TaxId:9606]
Gene: TCRBV6S4A1, TRBV7-9, TRBC2, TCRBC2
Database cross-references and differences (RAF-indexed):
- Uniprot A0A5A3 (Start-96)
- linker (97-113)
- engineered mutation (127)
- engineered mutation (169)
- engineered mutation (187)
- engineered mutation (201)
- Uniprot A0A5B9 (114-End)
Domains in SCOPe 2.08: d4udub1, d4udub2 - Chain 'C':
Compound: enterotoxin type e
Species: Staphylococcus aureus [TaxId:1280]
Gene: ENTE
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4uduc1, d4uduc2 - Heterogens: ZN, NA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4uduA (A:)
mgiqveqsppdlilqeganstlrcnfsdsvnnlqwfhqnpwgqlinlfyipsgtkqngrl
sattvaterysllyisssqttdsgvyfcavdsatsgtykyifgtgtrlkvlaniqnpdpa
vyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnk
sdfacanafnnsiipedtffpspess
Sequence, based on observed residues (ATOM records): (download)
>4uduA (A:)
iqveqsppdlilqeganstlrcnfsdsvnnlqwfhqnpwgqlinlfyipsgtkqngrlsa
ttvaterysllyisssqttdsgvyfcavdsaykyifgtgtrlkvlaniqnpdpavyqlrd
skssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnksdfaca
nafn
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4uduB (B:)
mdtgvsqnprhkitkrgqnvtfrcdpisehnrlywyrqtlgqgpefltyfqneaqleksr
llsdrfsaerpkgsfstleiqrteqgdsamylcasslggyeqyfgpgtrltvtedlknvf
ppevavfvpseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqp
alndsryalssrlrvsatfwqdprnhfrcqvqfyglsendewtqdrakpvtqivsaeawg
rad
Sequence, based on observed residues (ATOM records): (download)
>4uduB (B:)
tgvsqnprhkitkrgqnvtfrcdpisehnrlywyrqtlgqgpefltyfqneaqleksrll
sdrfsaerpkgsfstleiqrteqgdsamylcasslggyeqyfgpgtrltvtedlknvfpp
evavfvpseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpal
dsryalssrlrvsatfwqdprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgr
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4uduC (C:)
sekseeinekdlrkkselqrnalsnlrqiyyynekaitenkesddqflentllfkgfftg
hpwyndllvdlgskdatnkykgkkvdlygayygyqcaggtpnktacmyggvtlhdnnrlt
eekkvpinlwidgkqttvpidkvktskkevtvqeldlqarhylhgkfglynsdsfggkvq
rglivfhssegstvsydlfdaqgqypdtllriyrdnktinsenlhidlylytt
Sequence, based on observed residues (ATOM records): (download)
>4uduC (C:)
kdlrkkselqrnalsnlrqiyyynekaitenkesntllfkgfftghpwyndllvdlgskd
atnkykgkkvdlygayygyqcaggtpnktacmyggvtlhdnnrlteekkvpinlwidgkq
ttvpidkvktskkevtvqeldlqarhylhgkfglynsdsfggkvqrglivfhssegstvs
ydlfdaqgqypdtllriyrdnktinsenlhidlylytt