PDB entry 3l7z
View 3l7z on RCSB PDB site
Description: Crystal structure of the S. solfataricus archaeal exosome
Class: hydrolase/RNA binding protein
Keywords: Exosome, asymmetry, RNA processing, RNA degradation, conformation flexibility, thermal motion, hydrolase-RNA binding protein complex
Deposited on
2009-12-29, released
2010-06-23
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-11-01, with a file datestamp of
2017-10-27.
Experiment type: XRAY
Resolution: 2.41 Å
R-factor: N/A
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Gene: C20_023, Rrp41/42/4, SSO0732
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3l7za1, d3l7za2 - Chain 'B':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Gene: SSO0735
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Probable exosome complex RNA-binding protein 1
Species: Sulfolobus solfataricus [TaxId:2287]
Gene: C20_026, SSO0736
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3l7zc1, d3l7zc2, d3l7zc3 - Chain 'D':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Gene: C20_023, Rrp41/42/4, SSO0732
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3l7zd1, d3l7zd2 - Chain 'E':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Gene: SSO0735
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Probable exosome complex RNA-binding protein 1
Species: Sulfolobus solfataricus [TaxId:2287]
Gene: C20_026, SSO0736
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Gene: C20_023, Rrp41/42/4, SSO0732
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3l7zg1, d3l7zg2 - Chain 'H':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Gene: SSO0735
Database cross-references and differences (RAF-indexed):
- Chain 'I':
Compound: Probable exosome complex RNA-binding protein 1
Species: Sulfolobus solfataricus [TaxId:2287]
Gene: C20_026, SSO0736
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3l7zi1, d3l7zi2, d3l7zi3 - Heterogens: SO4
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3l7zA (A:)
msstpsnqniipiikkesivslfekgirqdgrkltdyrplsitldyakkadgsalvklgt
tmvlagtkleidkpyedtpnqgnlivnvellplayttfepgppdenaielarvvdrslrd
skaldltklviepgksvwtvwldvyvldyggnvldactlasvaalyntkvykveqisvnk
nevvgklplnypvvtisvakvdkylvvdpdldeesimdakisfsytpdlkivgiqksgkg
smslqdidqaentarstavklleelkkhlgi
Sequence, based on observed residues (ATOM records): (download)
>3l7zA (A:)
msstpsnqniipiikkesivslfekgirqdgrkltdyrplsitldyakkadgsalvklgt
tmvlagtkleidkpyedtpnqgnlivnvellppdenaielarvvdrslrdskaldltklv
iepgksvwtvwldvyvldyggnvldactlasvaalyntkvykvvgklplnypvvtisvak
vdkylvvdpdldeesimdakisfsytpdlkivgiqksgkgsmslqdidqaentarstavk
lleelkkhlgi
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3l7zC (C:)
mnmsqsqkivlqprsivvpgellaegefqipwspyilkinskyystvvglfdvkdtqfev
iplegsfyypkindiviglvedveiygwvvdikapykaylpasnllgrsinvgedlrryl
dvgdyviarienfdrsidpvlsvkgkdlgrvsngividimpvkvprvigknksmyetlts
ksgcsifvanngriwatcpsrfseeilieairkieneshikgltdrikqfieeklgerna
ssgetktns
Sequence, based on observed residues (ATOM records): (download)
>3l7zC (C:)
qkivlqprsivvpgellaegefqipwspyilkinskyystvvglfdvkdtqfeviplegs
fyypkindiviglvedveiygwvvdikapykaylpasnllgrsinvgedlrryldvgdyv
iarienfdrsidpvlsvkgkdlgrvsngividimpvkvprvigknksmyetltsksgcsi
fvanngriwatcpsrfseeilieairkieneshikgltdrik
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3l7zD (D:)
msstpsnqniipiikkesivslfekgirqdgrkltdyrplsitldyakkadgsalvklgt
tmvlagtkleidkpyedtpnqgnlivnvellplayttfepgppdenaielarvvdrslrd
skaldltklviepgksvwtvwldvyvldyggnvldactlasvaalyntkvykveqisvnk
nevvgklplnypvvtisvakvdkylvvdpdldeesimdakisfsytpdlkivgiqksgkg
smslqdidqaentarstavklleelkkhlgi
Sequence, based on observed residues (ATOM records): (download)
>3l7zD (D:)
msstpsnqniipiikkesivslfekgirqdgrkltdyrplsitldyakkadgsalvklgt
tmvlagtkleidkpyedtpnqgnlivnvellplayttfepgppdenaielarvvdrslrd
skaldltklviepgksvwtvwldvyvldyggnvldactlasvaalyntkvykvvgklpln
ypvvtisvakvdkylvvdpdldeesimdakisfsytpdlkivgiqksgkgsmslqdidqa
entarstavklleelkkhlgi
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.
- Chain 'G':
Sequence, based on SEQRES records: (download)
>3l7zG (G:)
msstpsnqniipiikkesivslfekgirqdgrkltdyrplsitldyakkadgsalvklgt
tmvlagtkleidkpyedtpnqgnlivnvellplayttfepgppdenaielarvvdrslrd
skaldltklviepgksvwtvwldvyvldyggnvldactlasvaalyntkvykveqisvnk
nevvgklplnypvvtisvakvdkylvvdpdldeesimdakisfsytpdlkivgiqksgkg
smslqdidqaentarstavklleelkkhlgi
Sequence, based on observed residues (ATOM records): (download)
>3l7zG (G:)
msstpsnqniipiikkesivslfekgirqdgrkltdyrplsitldyakkadgsalvklgt
tmvlagtkleidkpyedtpnqgnlivnvellplayttfepgppdenaielarvvdrslrd
skaldltklviepgksvwtvwldvyvldyggnvldactlasvaalyntkvykveqisvnk
nevvgklplnypvvtisvakvdkylvvdpdldeesimdakisfsytpdlkivgiqksgkg
smslqdidqaentarstavklleelkkhlg
- Chain 'H':
No sequence available.
- Chain 'I':
Sequence, based on SEQRES records: (download)
>3l7zI (I:)
mnmsqsqkivlqprsivvpgellaegefqipwspyilkinskyystvvglfdvkdtqfev
iplegsfyypkindiviglvedveiygwvvdikapykaylpasnllgrsinvgedlrryl
dvgdyviarienfdrsidpvlsvkgkdlgrvsngividimpvkvprvigknksmyetlts
ksgcsifvanngriwatcpsrfseeilieairkieneshikgltdrikqfieeklgerna
ssgetktns
Sequence, based on observed residues (ATOM records): (download)
>3l7zI (I:)
kivlqprsivvpgellaegefqipwspyilkinskyystvvglfdvkdfeviplegsfyy
pkindiviglvedveiygwvvdikapykaylpasnllgrsinvgeyldvgdyviarienf
drsidpvlsvkgkdlgrvsngividimpvkvprvigknksmyetltsksgcsifvanngr
iwateilieairkieneshikgltdr