PDB entry 3gzy
View 3gzy on RCSB PDB site
Description: Crystal Structure of the Biphenyl Dioxygenase from Comamonas testosteroni Sp. Strain B-356
Class: oxidoreductase
Keywords: DIOXYGENASE, RIESKIE, NON-HEME IRON, Aromatic hydrocarbons catabolism, Iron, Iron-sulfur, Metal-binding, NAD, Oxidoreductase
Deposited on
2009-04-08, released
2010-05-05
The last revision prior to the SCOPe 2.06 freeze date was dated
2013-02-06, with a file datestamp of
2013-02-01.
Experiment type: XRAY
Resolution: 1.62 Å
R-factor: 0.118
AEROSPACI score: 0.63
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Biphenyl dioxygenase subunit alpha
Species: Comamonas testosteroni [TaxId:285]
Gene: bphA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3gzya1, d3gzya2 - Chain 'B':
Compound: Biphenyl dioxygenase subunit beta
Species: Comamonas testosteroni [TaxId:285]
Gene: bphE
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3gzyb_ - Heterogens: FE2, FES, MES, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3gzyA (A:)
msstmkdtqeapvrwsrnwtpdairalvdqdngkldariyadqdlyqlelervfgrswlm
lghethipkigdylttymgedpvimvrqkdqsikvflnqcrhrgmrivrsdggnakaftc
tyhgwaydiagnlvnvpfekeafcdkkegdcgfdkadwgplqarvetykglvfanwdpea
pdlktylsdampymdvmldrteagteaiggiqkwvipcnwkfaaeqfcsdmyhagtmshl
sgvlaglppemdltqiqlskngnqfrsawgghgagwfindssillsvvgpkitqywtqgp
aaekaarrvpqlpildmfgqhmtvfptcsflpgintirtwhprgpnevevwafvlvdada
pedikeefrlqnirtfnaggvfeqddgenwveiqrvmrghkakstslcakmglnvpnknn
paypgktayvyaeeaargmyhhwsrmmsepswdtlkp
Sequence, based on observed residues (ATOM records): (download)
>3gzyA (A:)
nwtpdairalvdqdngkldariyadqdlyqlelervfgrswlmlghethipkigdyltty
mgedpvimvrqkdqsikvflnqcrhrgmrivrsdggnakaftctyhgwaydiagnlvnvp
fekeafcdkkegdcgfdkadwgplqarvetykglvfanwdpeapdlktylsdampymdvm
ldrteagteaiggiqkwvipcnwkfaaeqfcsdmyhagtmshlsgvlaglppemdltqiq
lskngnqfrsawgghgagwfindssillsvvgpkitqywtqgpaaekaarrvpqlpildm
fgqhmtvfptcsflpgintirtwhprgpnevevwafvlvdadapedikeefrlqnirtfn
aggvfeqddgenwveiqrvmrghkakstslcakmglnvpnknnpaypgktayvyaeeaar
gmyhhwsrmmsepswdtlkp
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3gzyB (B:)
mistplskefewpakpvslelqhqveqfyyreaqlldhhafqawfallaedihywmpirt
vrtareqgleyvpaganahfddthatmygrirqktsdlnwaedppsrtrhlvsnvivrem
dtpgtlevasafllyrsrlerqvdvfagerrdvlriadnplgfqiakrtiildqstvlan
nlsvff