PDB entry 3aji

View 3aji on RCSB PDB site
Description: Structure of Gankyrin-S6ATPase photo-cross-linked site-specifically, and incoporated by genetic code expansion
Class: chaperone/protein binding
Keywords: Gankyrin, S6 atpase, p-benzoyl-L-phenylalanine, pbpa, amber suppression, Structural Genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, CHAPERONE-PROTEIN BINDING complex
Deposited on 2010-06-07, released 2010-12-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-01-29, with a file datestamp of 2014-01-24.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.171
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 26S proteasome non-ATPase regulatory subunit 10
    Species: Mus musculus [TaxId:10090]
    Gene: Psmd10
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Z2X2 (Start-230)
      • engineered mutation (84)
    Domains in SCOPe 2.07: d3ajia_
  • Chain 'B':
    Compound: Proteasome (Prosome, macropain) 26S subunit, ATPase, 4
    Species: Mus musculus [TaxId:10090]
    Gene: Psmc4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6ZWN9 (1-End)
      • expression tag (0)
  • Chain 'C':
    Compound: 26S proteasome non-ATPase regulatory subunit 10
    Species: Mus musculus [TaxId:10090]
    Gene: Psmd10
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Z2X2 (Start-230)
      • engineered mutation (84)
    Domains in SCOPe 2.07: d3ajic_
  • Chain 'D':
    Compound: Proteasome (Prosome, macropain) 26S subunit, ATPase, 4
    Species: Mus musculus [TaxId:10090]
    Gene: Psmc4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6ZWN9 (1-End)
      • expression tag (0)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ajiA (A:)
megcvsnimicnlaysgkldelkeriladkslatrtdqdsrtalhwacsaghteivefll
qlgvpvndkddagwsplhiaasagfdeivkallvkgahvnavnqngctplhyaasknrhe
iavmllegganpdakdhydatamhraaakgnlkmvhillfykastniqdtegntplhlac
deerveeakflvtqgasiyienkeektplqvakgglglilkrlaegeeasm

    Sequence, based on observed residues (ATOM records): (download) 
    >3ajiA (A:)
gcvsnimicnlaysgkldelkeriladkslatrtdqdsrtalhwacsaghteivefllql
gvpvndkddagwsplhiaasagfdeivkallvkgahvnavnqngctplhyaasknrheia
vmllegganpdakdhydatamhraaakgnlkmvhillfykastniqdtegntplhlacde
erveeakflvtqgasiyienkeektplqvakgglglilkrlaegeeasm

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3ajiC (C:)
megcvsnimicnlaysgkldelkeriladkslatrtdqdsrtalhwacsaghteivefll
qlgvpvndkddagwsplhiaasagfdeivkallvkgahvnavnqngctplhyaasknrhe
iavmllegganpdakdhydatamhraaakgnlkmvhillfykastniqdtegntplhlac
deerveeakflvtqgasiyienkeektplqvakgglglilkrlaegeeasm

    Sequence, based on observed residues (ATOM records): (download) 
    >3ajiC (C:)
gcvsnimicnlaysgkldelkeriladkslatrtdqdsrtalhwacsaghteivefllql
gvpvndkddagwsplhiaasagfdeivkallvkgahvnavnqngctplhyaasknrheia
vmllegganpdakdhydatamhraaakgnlkmvhillfykastniqdtegntplhlacde
erveeakflvtqgasiyienkeektplqvakgglglilkrlaegeeasm

  • Chain 'D':
    No sequence available.