SCOPe 2.08: Structural Classification of Proteins

PDB entry 2xzm

View 2xzm on RCSB PDB site
Description: crystal structure of the eukaryotic 40s ribosomal subunit in complex with initiation factor 1. this file contains the 40s subunit and initiation factor for molecule 1
Class: ribosome
Keywords: ribosome, translation
Deposited on 2010-11-26, released 2011-01-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: XRAY
Resolution: 3.93 Å
R-factor: 0.2065
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

Chain '1':
Compound: ribosomal protein s28e containing protein
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q234G5 (Start-67)
Domains in SCOPe 2.08: d2xzm1_
Chain '2':
Compound: 40s ribosomal protein s8
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q22AV0 (Start-207)
Domains in SCOPe 2.08: d2xzm2_
Chain '3':
Compound: 40s ribosomal protein rps7e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- PDB 2XZM (Start-196)
Domains in SCOPe 2.08: d2xzm3_
Chain '4':
Compound: 40s ribosomal protein s3a
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q23DE3
Domains in SCOPe 2.08: d2xzm4_
Chain '5':
Compound: ribosomal protein s26e containing protein
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q23PT4
Domains in SCOPe 2.08: d2xzm5_
Chain '6':
Compound: rps27e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q22CK0 (Start-52)
  - expression tag (53-80)
Domains in SCOPe 2.08: d2xzm61, d2xzm62
Chain '7':
Compound: plectin/s10 domain containing protein
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q24F70
Domains in SCOPe 2.08: d2xzm7_
Chain '8':
Compound: rps25e,
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- PDB 2XZM
Domains in SCOPe 2.08: d2xzm8_
Chain '9':
Compound: rps31e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- PDB 2XZM
Domains in SCOPe 2.08: d2xzm9_
Chain 'A':
Compound: 18S rRNA
Species: Tetrahymena thermophila [TaxId:5911]
Chain 'B':
Compound: rps0e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- PDB 2XZM (0-End)
Domains in SCOPe 2.08: d2xzmb_
Chain 'C':
Compound: kh domain containing protein
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q22AV9
Domains in SCOPe 2.08: d2xzmc_
Chain 'D':
Compound: ribosomal protein s4 containing protein
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q230V2 (0-End)
Domains in SCOPe 2.08: d2xzmd_
Chain 'E':
Compound: ribosomal protein s5 containing protein
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q23KG1
Domains in SCOPe 2.08: d2xzme_
Chain 'F':
Compound: eif1
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- PDB 2XZM (Start-100)
Domains in SCOPe 2.08: d2xzmf_
Chain 'G':
Compound: ribosomal protein s7 containing protein
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q22WU7 (Start-199)
Domains in SCOPe 2.08: d2xzmg_
Chain 'H':
Compound: ribosomal protein s8 containing protein
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q238Q8 (Start-129)
Domains in SCOPe 2.08: d2xzmh_
Chain 'I':
Compound: rps16e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- PDB 2XZM (Start-144)
Domains in SCOPe 2.08: d2xzmi_
Chain 'J':
Compound: ribosomal protein s10 containing protein
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q22DC6
Domains in SCOPe 2.08: d2xzmj_
Chain 'K':
Compound: rps14e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- PDB 2XZM (Start-150)
Domains in SCOPe 2.08: d2xzmk_
Chain 'L':
Compound: 40s ribosomal protein s12
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot P06147 (Start-141)
Domains in SCOPe 2.08: d2xzml_
Chain 'M':
Compound: rps18e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- PDB 2XZM (0-150)
Domains in SCOPe 2.08: d2xzmm_
Chain 'N':
Compound: rps29e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q22MB0 (Start-52)
  - expression tag (53-54)
Domains in SCOPe 2.08: d2xzmn1, d2xzmn2
Chain 'O':
Compound: rps13e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- PDB 2XZM (Start-152)
Domains in SCOPe 2.08: d2xzmo_
Chain 'P':
Compound: rps24e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q22MB0 (Start-148)
Domains in SCOPe 2.08: d2xzmp_
Chain 'Q':
Compound: ribosomal protein s17 containing protein
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q22B78 (0-156)
Domains in SCOPe 2.08: d2xzmq_
Chain 'R':
Compound: rack1
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q24D42 (Start-342)
Domains in SCOPe 2.08: d2xzmr_
Chain 'S':
Compound: rps15e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- PDB 2XZM
Domains in SCOPe 2.08: d2xzms_
Chain 'T':
Compound: rps19e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- PDB 2XZM (Start-154)
Domains in SCOPe 2.08: d2xzmt_
Chain 'U':
Compound: ribosomal protein l7ae containing protein
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot Q22W26 (Start-125)
Domains in SCOPe 2.08: d2xzmu_
Chain 'V':
Compound: rps17e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- PDB 2XZM
Domains in SCOPe 2.08: d2xzmv_
Chain 'W':
Compound: 40s ribosomal protein s4
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot P0C233 (1-259)
  - conflict (69)
  - conflict (235-236)
Domains in SCOPe 2.08: d2xzmw_
Chain 'X':
Compound: rps30e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- PDB 2XZM
Domains in SCOPe 2.08: d2xzmx_
Chain 'Y':
Compound: rps6e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- Uniprot A4VD76 (0-End)
Domains in SCOPe 2.08: d2xzmy_
Chain 'Z':
Compound: rps21e
Species: Tetrahymena thermophila [TaxId:5911]
Database cross-references and differences (RAF-indexed):
- PDB 2XZM (0-96)
Domains in SCOPe 2.08: d2xzmz_
Heterogens: MG, ZN, HOH

PDB Chain Sequences:

Chain '1':
Sequence, based on SEQRES records: (download)

>2xzm1 (1:)
mnteettkarimdvlgktgsrggitqvrvvlisgkeegrqlirnvkgacrvgdvlelmec
erearrlr