PDB entry 2oog

View 2oog on RCSB PDB site
Description: Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus
Class: hydrolase
Keywords: PHOSPHATASE, GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, New York SGX Research Center for Structural Genomics, NYSGRC, NYSGXRC, HYDROLASE
Deposited on 2007-01-25, released 2007-02-06
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.236
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: glpQ, SA0820
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7A6H7 (Start-278)
      • expression tag (279)
    Domains in SCOPe 2.07: d2ooga1, d2ooga2
  • Chain 'B':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: glpQ, SA0820
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7A6H7 (Start-278)
      • expression tag (279)
    Domains in SCOPe 2.07: d2oogb1, d2oogb2
  • Chain 'C':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: glpQ, SA0820
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7A6H7 (Start-278)
      • expression tag (279)
    Domains in SCOPe 2.07: d2oogc1, d2oogc2
  • Chain 'D':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: glpQ, SA0820
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7A6H7 (Start-278)
      • expression tag (279-280)
    Domains in SCOPe 2.07: d2oogd1, d2oogd2
  • Chain 'E':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: glpQ, SA0820
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7A6H7 (Start-278)
      • expression tag (279)
    Domains in SCOPe 2.07: d2ooge1, d2ooge2
  • Chain 'F':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: glpQ, SA0820
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7A6H7 (Start-278)
      • expression tag (279)
    Domains in SCOPe 2.07: d2oogf1, d2oogf2
  • Heterogens: ZN, SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2oogA (A:)
eqtnqiankpqaiqwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidl
qrtkdghlvamhdetvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakv
ptldeilerygpnanyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsd
eslkkihrqnkhvplvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdl
gfivhpytvnekadmlrlnkygvdgvftnfadkykevikeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2oogA (A:)
qwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidlqrtkdghlvamhd
etvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakvptldeilerygpn
anyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsdeslkkihrqnkhv
plvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdlgfivhpytvneka
dmlrlnkygvdgvftnfadkykevike

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2oogB (B:)
eqtnqiankpqaiqwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidl
qrtkdghlvamhdetvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakv
ptldeilerygpnanyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsd
eslkkihrqnkhvplvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdl
gfivhpytvnekadmlrlnkygvdgvftnfadkykevikeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2oogB (B:)
qwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidlqrtkdghlvamhd
etvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakvptldeilerygpn
anyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsdeslkkihrqnkhv
plvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdlgfivhpytvneka
dmlrlnkygvdgvftnfadkykevike

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2oogC (C:)
eqtnqiankpqaiqwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidl
qrtkdghlvamhdetvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakv
ptldeilerygpnanyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsd
eslkkihrqnkhvplvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdl
gfivhpytvnekadmlrlnkygvdgvftnfadkykevikeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2oogC (C:)
qwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidlqrtkdghlvamhd
etvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakvptldeilerygpn
anyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsdeslkkihrqnkhv
plvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdlgfivhpytvneka
dmlrlnkygvdgvftnfadkykevike

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2oogD (D:)
eqtnqiankpqaiqwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidl
qrtkdghlvamhdetvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakv
ptldeilerygpnanyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsd
eslkkihrqnkhvplvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdl
gfivhpytvnekadmlrlnkygvdgvftnfadkykevikeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2oogD (D:)
qwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidlqrtkdghlvamhd
etvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakvptldeilerygpn
anyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsdeslkkihrqnkhv
plvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdlgfivhpytvneka
dmlrlnkygvdgvftnfadkykevikeg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2oogE (E:)
eqtnqiankpqaiqwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidl
qrtkdghlvamhdetvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakv
ptldeilerygpnanyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsd
eslkkihrqnkhvplvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdl
gfivhpytvnekadmlrlnkygvdgvftnfadkykevikeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2oogE (E:)
qwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidlqrtkdghlvamhd
etvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakvptldeilerygpn
anyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsdeslkkihrqnkhv
plvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdlgfivhpytvneka
dmlrlnkygvdgvftnfadkykevike

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2oogF (F:)
eqtnqiankpqaiqwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidl
qrtkdghlvamhdetvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakv
ptldeilerygpnanyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsd
eslkkihrqnkhvplvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdl
gfivhpytvnekadmlrlnkygvdgvftnfadkykevikeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2oogF (F:)
qwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidlqrtkdghlvamhd
etvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakvptldeilerygpn
anyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsdeslkkihrqnkhv
plvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdlgfivhpytvneka
dmlrlnkygvdgvftnfadkykevike