PDB entry 2j2t

View 2j2t on RCSB PDB site
Description: agmatine deiminase from enterococcus faecalis covalently linked with a reaction intermediate
Class: hydrolase
Keywords: agmatine deiminase, tetramer, hydrolase, agdi, 5-fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct, agmatine iminohydrolase
Deposited on 2006-08-17, released 2006-10-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2006-10-11, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: 0.168
AEROSPACI score: 0.58 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: agmatine deiminase
    Species: ENTEROCOCCUS FAECALIS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2j2ta_
  • Chain 'B':
    Compound: agmatine deiminase
    Species: ENTEROCOCCUS FAECALIS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2j2tb_
  • Chain 'C':
    Compound: agmatine deiminase
    Species: ENTEROCOCCUS FAECALIS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2j2tc_
  • Chain 'D':
    Compound: agmatine deiminase
    Species: ENTEROCOCCUS FAECALIS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2j2td1, d2j2td2
  • Chain 'E':
    Compound: agmatine deiminase
    Species: ENTEROCOCCUS FAECALIS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2j2te_
  • Chain 'F':
    Compound: agmatine deiminase
    Species: ENTEROCOCCUS FAECALIS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2j2tf_
  • Chain 'G':
    Compound: agmatine deiminase
    Species: ENTEROCOCCUS FAECALIS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2j2tg_
  • Chain 'H':
    Compound: agmatine deiminase
    Species: ENTEROCOCCUS FAECALIS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2j2th_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2j2tA (A:)
makrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqft
pmnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawg
glvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllseg
rnpqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqn
spfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdic
iasymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitq
qepkrvggkqnsssvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2j2tA (A:)
akrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqftp
mnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawgg
lvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllsegr
npqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqns
pfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdici
asymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitqq
epkrvg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2j2tB (B:)
makrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqft
pmnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawg
glvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllseg
rnpqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqn
spfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdic
iasymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitq
qepkrvggkqnsssvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2j2tB (B:)
akrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqftp
mnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawgg
lvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllsegr
npqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqns
pfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdici
asymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitqq
epkr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2j2tC (C:)
makrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqft
pmnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawg
glvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllseg
rnpqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqn
spfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdic
iasymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitq
qepkrvggkqnsssvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2j2tC (C:)
akrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqftp
mnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawgg
lvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllsegr
npqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqns
pfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdici
asymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitqq
epkrvgg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2j2tD (D:)
makrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqft
pmnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawg
glvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllseg
rnpqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqn
spfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdic
iasymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitq
qepkrvggkqnsssvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2j2tD (D:)
akrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqftp
mnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawgg
lvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllsegr
npqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqns
pfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdici
asymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitqq
epkrvggkqnss

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2j2tE (E:)
makrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqft
pmnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawg
glvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllseg
rnpqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqn
spfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdic
iasymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitq
qepkrvggkqnsssvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2j2tE (E:)
makrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqft
pmnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawg
glvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllseg
rnpqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqn
spfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdic
iasymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitq
qepkrvgg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2j2tF (F:)
makrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqft
pmnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawg
glvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllseg
rnpqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqn
spfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdic
iasymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitq
qepkrvggkqnsssvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2j2tF (F:)
akrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqftp
mnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawgg
lvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllsegr
npqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqns
pfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdici
asymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitqq
epkrvgg

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2j2tG (G:)
makrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqft
pmnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawg
glvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllseg
rnpqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqn
spfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdic
iasymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitq
qepkrvggkqnsssvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2j2tG (G:)
akrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqftp
mnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawgg
lvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllsegr
npqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqns
pfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdici
asymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitqq
epkrvg

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2j2tH (H:)
makrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqft
pmnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawg
glvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllseg
rnpqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqn
spfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdic
iasymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitq
qepkrvggkqnsssvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2j2tH (H:)
akrivgstpkqdgfrmpgefepqekvwmiwperpdnwrdggkpvqeaftnvakaisqftp
mnvvvsqqqfqncrrqlppeitvyemsnndawvrdcgpsfvindhgeirgvdwtfnawgg
lvdglyfpwdqddlvaqkiceiehvdsyrtddfvleggsfhvdgqgtvlttemcllsegr
npqlskeaieqklcdylnvekvlwlgdgidpeetnghvddvacfiapgevaciytedqns
pfyeaaqdayqrllkmtdakgrqlkvhklccpvknvtikgsfkidfvegtmpredgdici
asymnflitndgvivpqygdendhlaleqvqtmfpdkkivgvntvevvygggnihcitqq
epkrv