PDB entry 2bgw

View 2bgw on RCSB PDB site
Description: XPF from Aeropyrum pernix, complex with DNA
Class: hydrolase
Keywords: hydrolase, structure specific endonuclease, nucleotide excision repair
Deposited on 2005-01-06, released 2005-02-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-05-08, with a file datestamp of 2019-05-03.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: xpf endonuclease
    Species: Aeropyrum pernix [TaxId:56636]
    Database cross-references and differences (RAF-indexed):
    • PDB 2BGW (0-6)
    • Uniprot Q9YC15 (7-218)
    Domains in SCOPe 2.08: d2bgwa1, d2bgwa2
  • Chain 'B':
    Compound: xpf endonuclease
    Species: Aeropyrum pernix [TaxId:56636]
    Database cross-references and differences (RAF-indexed):
    • PDB 2BGW
    • Uniprot Q9YC15 (7-End)
    Domains in SCOPe 2.08: d2bgwb1, d2bgwb2
  • Chain 'C':
    Compound: 5'-d(*gp*ap*tp*cp*ap*cp*ap*gp*ap*tp *gp*cp*tp*gp*a)-3'
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: 5'-d(*tp*cp*ap*gp*cp*ap*tp*cp*tp*gp *tp*gp*ap*tp*c)-3'
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: MG, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2bgwA (A:)
mledpggrprvyvdvreerspvpsileslgvqvipkqlpmgdylvsdsiiverktssdfa
kslfdgrlfeqasrlaehyetvfiivegppvprryrgrerslyaamaalqldygirlmnt
mdpkgtalvieslarlstreggqrivihkkprlsdvrewqlyilqsfpgigrrtaerile
rfgslerfftaskaeiskvegigekraeeikkilmtpyk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2bgwB (B:)
mledpggrprvyvdvreerspvpsileslgvqvipkqlpmgdylvsdsiiverktssdfa
kslfdgrlfeqasrlaehyetvfiivegppvprryrgrerslyaamaalqldygirlmnt
mdpkgtalvieslarlstreggqrivihkkprlsdvrewqlyilqsfpgigrrtaerile
rfgslerfftaskaeiskvegigekraeeikkilmtpyk

    Sequence, based on observed residues (ATOM records): (download) 
    >2bgwB (B:)
rprvyvdvreerspvpsileslgvqvipkqlpmgdylvsdsiiverktssdfakslfdgr
lfeqasrlaehyetvfiivegppvprryrgrerslyaamaalqldygirlmntmdpkgta
lvieslarlstkprlsdvrewqlyilqsfpgigrrtaerilerfgslerfftaskaeisk
vegigekraeeikkilmtpy

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.