SCOPe 2.08: Structural Classification of Proteins

PDB entry 1ya7

View 1ya7 on RCSB PDB site
Description: Implications for interactions of proteasome with PAN and PA700 from the 1.9 A structure of a proteasome-11S activator complex
Class: hydrolase/hydrolase activator
Keywords: archaeal proteasome, PA26, copmlex, open gate, HYDROLASE-HYDROLASE ACTIVATOR COMPLEX
Deposited on 2004-12-17, released 2005-07-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.18
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Proteasome alpha subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmA
Database cross-references and differences (RAF-indexed):
- Uniprot P25156 (Start-232)
Domains in SCOPe 2.08: d1ya7a_
Chain 'B':
Compound: Proteasome alpha subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmA
Database cross-references and differences (RAF-indexed):
- Uniprot P25156 (Start-232)
Domains in SCOPe 2.08: d1ya7b_
Chain 'C':
Compound: Proteasome alpha subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmA
Database cross-references and differences (RAF-indexed):
- Uniprot P25156 (Start-232)
Domains in SCOPe 2.08: d1ya7c_
Chain 'D':
Compound: Proteasome alpha subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmA
Database cross-references and differences (RAF-indexed):
- Uniprot P25156 (Start-232)
Domains in SCOPe 2.08: d1ya7d_
Chain 'E':
Compound: Proteasome alpha subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmA
Database cross-references and differences (RAF-indexed):
- Uniprot P25156 (Start-232)
Domains in SCOPe 2.08: d1ya7e_
Chain 'F':
Compound: Proteasome alpha subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmA
Database cross-references and differences (RAF-indexed):
- Uniprot P25156 (Start-232)
Domains in SCOPe 2.08: d1ya7f_
Chain 'G':
Compound: Proteasome alpha subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmA
Database cross-references and differences (RAF-indexed):
- Uniprot P25156 (Start-232)
Domains in SCOPe 2.08: d1ya7g_
Chain 'H':
Compound: Proteasome beta subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmB
Database cross-references and differences (RAF-indexed):
- Uniprot P28061 (Start-210)
Domains in SCOPe 2.08: d1ya7h_
Chain 'I':
Compound: Proteasome beta subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmB
Database cross-references and differences (RAF-indexed):
- Uniprot P28061 (Start-210)
Domains in SCOPe 2.08: d1ya7i_
Chain 'J':
Compound: Proteasome beta subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmB
Database cross-references and differences (RAF-indexed):
- Uniprot P28061 (Start-210)
Domains in SCOPe 2.08: d1ya7j_
Chain 'K':
Compound: Proteasome beta subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmB
Database cross-references and differences (RAF-indexed):
- Uniprot P28061 (Start-210)
Domains in SCOPe 2.08: d1ya7k_
Chain 'L':
Compound: Proteasome beta subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmB
Database cross-references and differences (RAF-indexed):
- Uniprot P28061 (Start-210)
Domains in SCOPe 2.08: d1ya7l_
Chain 'M':
Compound: Proteasome beta subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmB
Database cross-references and differences (RAF-indexed):
- Uniprot P28061 (Start-210)
Domains in SCOPe 2.08: d1ya7m_
Chain 'N':
Compound: Proteasome beta subunit
Species: Thermoplasma acidophilum [TaxId:2303]
Gene: psmB
Database cross-references and differences (RAF-indexed):
- Uniprot P28061 (Start-210)
Domains in SCOPe 2.08: d1ya7n_
Chain 'O':
Compound: proteasome activator protein PA26
Species: Trypanosoma brucei [TaxId:5691]
Database cross-references and differences (RAF-indexed):
- GB AAD50581 (Start-236)
  - variant (54)
Domains in SCOPe 2.08: d1ya7o1
Chain 'P':
Compound: proteasome activator protein PA26
Species: Trypanosoma brucei [TaxId:5691]
Database cross-references and differences (RAF-indexed):
- GB AAD50581 (Start-236)
  - variant (54)
Domains in SCOPe 2.08: d1ya7p_
Chain 'Q':
Compound: proteasome activator protein PA26
Species: Trypanosoma brucei [TaxId:5691]
Database cross-references and differences (RAF-indexed):
- GB AAD50581 (Start-236)
  - variant (54)
Domains in SCOPe 2.08: d1ya7q_
Chain 'R':
Compound: proteasome activator protein PA26
Species: Trypanosoma brucei [TaxId:5691]
Database cross-references and differences (RAF-indexed):
- GB AAD50581 (Start-236)
  - variant (54)
Domains in SCOPe 2.08: d1ya7r_
Chain 'S':
Compound: proteasome activator protein PA26
Species: Trypanosoma brucei [TaxId:5691]
Database cross-references and differences (RAF-indexed):
- GB AAD50581 (Start-236)
  - variant (54)
Domains in SCOPe 2.08: d1ya7s_
Chain 'T':
Compound: proteasome activator protein PA26
Species: Trypanosoma brucei [TaxId:5691]
Database cross-references and differences (RAF-indexed):
- GB AAD50581 (Start-236)
  - variant (54)
Domains in SCOPe 2.08: d1ya7t_
Chain 'U':
Compound: proteasome activator protein PA26
Species: Trypanosoma brucei [TaxId:5691]
Database cross-references and differences (RAF-indexed):
- GB AAD50581 (Start-236)
  - variant (54)
Domains in SCOPe 2.08: d1ya7u_
Heterogens: SO4, GOL, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1ya7A (A:)
mqqgqmaydraitvfspdgrlfqveyareavkkgstalgmkfangvllisdkkvrsrlie
qnsiekiqliddyvaavtsglvadarvlvdfarisaqqekvtygslvnienlvkrvadqm
qqytqyggvrpygvslifagidqigprlfdcdpagtineykataigsgkdavvsflerey
kenlpekeavtlgikalkssleegeelkapeiasitvgnkyriydqeevkkfl