PDB entry 1wdd

View 1wdd on RCSB PDB site
Description: Crystal Structure of Activated Rice Rubisco Complexed with 2-Carboxyarabinitol-1,5-bisphosphate
Class: lyase
Keywords: Rubisco, Photosynthesis, alpha/beta barrel, N-methylmethionine, Post-translational modification, LYASE
Deposited on 2004-05-13, released 2004-11-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-06-05, with a file datestamp of 2013-05-31.
Experiment type: XRAY
Resolution: 1.35 Å
R-factor: 0.16
AEROSPACI score: 0.73 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Oryza sativa Japonica Group [TaxId:39947]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wdda1, d1wdda2
  • Chain 'E':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Oryza sativa Japonica Group [TaxId:39947]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wdde1, d1wdde2
  • Chain 'S':
    Compound: Ribulose bisphosphate carboxylase small chain C
    Species: Oryza sativa Japonica Group [TaxId:39947]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wdds_
  • Chain 'W':
    Compound: Ribulose bisphosphate carboxylase small chain C
    Species: Oryza sativa Japonica Group [TaxId:39947]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1wddw_
  • Heterogens: MG, CAP, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1wddA (A:)
mspqtetkasvgfkagvkdykltyytpeyetkdtdilaafrvtpqpgvppeeagaavaae
sstgtwttvwtdgltsldrykgrcyhiepvvgednqyiayvaypldlfeegsvtnmftsi
vgnvfgfkalralrledlripptysktfqgpphgiqverdklnkygrpllgctikpklgl
saknygracyeclrggldftkddenvnsqpfmrwrdrfvfcaeaiyksqaetgeikghyl
natagtceemikravfarelgvpivmhdyltggftantslahycrdnglllhihramhav
idrqknhgmhfrvlakalrmsggdhihagtvvgklegeremtlgfvdllrddfiekdrar
gifftqdwvsmpgvipvasggihvwhmpalteifgddsvlqfgggtlghpwgnapgaaan
rvaleacvqarnegrdlaregneiirsackwspelaaaceiwkaikfefepvdklds

    Sequence, based on observed residues (ATOM records): (download) 
    >1wddA (A:)
vgfkagvkdykltyytpeyetkdtdilaafrvtpqpgvppeeagaavaaesstgtwttvw
tdgltsldrykgrcyhiepvvgednqyiayvaypldlfeegsvtnmftsivgnvfgfkal
ralrledlripptysktfqgpphgiqverdklnkygrpllgctikpklglsaknygracy
eclrggldftkddenvnsqpfmrwrdrfvfcaeaiyksqaetgeikghylnatagtceem
ikravfarelgvpivmhdyltggftantslahycrdnglllhihramhavidrqknhgmh
frvlakalrmsggdhihagtvvgklegeremtlgfvdllrddfiekdrargifftqdwvs
mpgvipvasggihvwhmpalteifgddsvlqfgggtlghpwgnapgaaanrvaleacvqa
rnegrdlaregneiirsackwspelaaaceiwkaikfefepvdkl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1wddE (E:)
mspqtetkasvgfkagvkdykltyytpeyetkdtdilaafrvtpqpgvppeeagaavaae
sstgtwttvwtdgltsldrykgrcyhiepvvgednqyiayvaypldlfeegsvtnmftsi
vgnvfgfkalralrledlripptysktfqgpphgiqverdklnkygrpllgctikpklgl
saknygracyeclrggldftkddenvnsqpfmrwrdrfvfcaeaiyksqaetgeikghyl
natagtceemikravfarelgvpivmhdyltggftantslahycrdnglllhihramhav
idrqknhgmhfrvlakalrmsggdhihagtvvgklegeremtlgfvdllrddfiekdrar
gifftqdwvsmpgvipvasggihvwhmpalteifgddsvlqfgggtlghpwgnapgaaan
rvaleacvqarnegrdlaregneiirsackwspelaaaceiwkaikfefepvdklds

    Sequence, based on observed residues (ATOM records): (download) 
    >1wddE (E:)
gfkagvkdykltyytpeyetkdtdilaafrvtpqpgvppeeagaavaaesstgtwttvwt
dgltsldrykgrcyhiepvvgednqyiayvaypldlfeegsvtnmftsivgnvfgfkalr
alrledlripptysktfqgpphgiqverdklnkygrpllgctikpklglsaknygracye
clrggldftkddenvnsqpfmrwrdrfvfcaeaiyksqaetgeikghylnatagtceemi
kravfarelgvpivmhdyltggftantslahycrdnglllhihramhavidrqknhgmhf
rvlakalrmsggdhihagtvvgklegeremtlgfvdllrddfiekdrargifftqdwvsm
pgvipvasggihvwhmpalteifgddsvlqfgggtlghpwgnapgaaanrvaleacvqar
negrdlaregneiirsackwspelaaaceiwkaikfefepvdkl

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >1wddS (S:)
mqvwpiegikkfetlsylppltvedllkqieyllrskwvpclefskvgfvyrenhrspgy
ydgrywtmwklpmfgctdatqvlkeleeakkaypdafvriigfdnvrqvqlisfiaykpp
gceesggn

    Sequence, based on observed residues (ATOM records): (download) 
    >1wddS (S:)
mqvwpiegikkfetlsylppltvedllkqieyllrskwvpclefskvgfvyrenhrspgy
ydgrywtmwklpmfgctdatqvlkeleeakkaypdafvriigfdnvrqvqlisfiaykpp
gc

  • Chain 'W':
    Sequence, based on SEQRES records: (download) 
    >1wddW (W:)
mqvwpiegikkfetlsylppltvedllkqieyllrskwvpclefskvgfvyrenhrspgy
ydgrywtmwklpmfgctdatqvlkeleeakkaypdafvriigfdnvrqvqlisfiaykpp
gceesggn

    Sequence, based on observed residues (ATOM records): (download) 
    >1wddW (W:)
mqvwpiegikkfetlsylppltvedllkqieyllrskwvpclefskvgfvyrenhrspgy
ydgrywtmwklpmfgctdatqvlkeleeakkaypdafvriigfdnvrqvqlisfiaykpp
gc