PDB entry 1tf6

View 1tf6 on RCSB PDB site
Description: co-crystal structure of xenopus tfiiia zinc finger domain bound to the 5s ribosomal RNA gene internal control region
Class: transcription/DNA
Keywords: complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein
Deposited on 1998-03-02, released 1998-07-08
The last revision prior to the SCOP 1.55 freeze date was dated 1998-07-10, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.308
AEROSPACI score: 0.02 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: protein (transcription factor iiia)
  Species: Xenopus laevis
  Database cross-references and differences (RAF-indexed):
  • Uniprot P03001
  Domains in SCOP 1.55: d1tf6a1, d1tf6a2, d1tf6a3, d1tf6a4, d1tf6a5, d1tf6a6
• Chain 'B':
  Compound: DNA (5'-d(*ap*cp*gp*gp*gp*cp*cp*tp*gp*gp*tp*tp*ap*gp*tp*ap*c p*cp*tp*gp*gp*ap* tp*gp*gp*gp*ap*gp*ap*cp*c)-3')
  
• Chain 'C':
  Compound: DNA (5'-d(*tp*gp*gp*tp*cp*tp*cp*cp*cp*ap*tp*cp*cp*ap*gp*gp*t p*ap*cp*tp*ap*ap* cp*cp*ap*gp*gp*cp*cp*cp*g)-3')
  
• Chain 'D':
  Compound: protein (transcription factor iiia)
  Species: Xenopus laevis
  Database cross-references and differences (RAF-indexed):
  • Uniprot P03001
  Domains in SCOP 1.55: d1tf6d1, d1tf6d2, d1tf6d3, d1tf6d4, d1tf6d5, d1tf6d6
• Chain 'E':
  Compound: DNA (5'-d(*ap*cp*gp*gp*gp*cp*cp*tp*gp*gp*tp*tp*ap*gp*tp*ap*c p*cp*tp*gp*gp*ap* tp*gp*gp*gp*ap*gp*ap*cp*c)-3')
  
• Chain 'F':
  Compound: DNA (5'-d(*tp*gp*gp*tp*cp*tp*cp*cp*cp*ap*tp*cp*cp*ap*gp*gp*t p*ap*cp*tp*ap*ap* cp*cp*ap*gp*gp*cp*cp*cp*g)-3')
  
• Heterogens: ZN

PDB Chain Sequences:

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1tf6A (A:)
  ykryicsfadcgaaynknwklqahlckhtgekpfpckeegcekgftslhhltrhslthtg
  eknftcdsdgcdlrfttkanmkkhfnrfhnikicvyvchfencgkafkkhnqlkvhqfsh
  tqqlpyecphegcdkrfslpsrlkrhekvhagypckkddscsfvgktwtlylkhvaech
  

  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1tf6D (D:)
  pvvykryicsfadcgaaynknwklqahlckhtgekpfpckeegcekgftslhhltrhslt
  htgeknftcdsdgcdlrfttkanmkkhfnrfhnikicvyvchfencgkafkkhnqlkvhq
  fshtqqlpyecphegcdkrfslpsrlkrhekvhagypckkddscsfvgktwtlylkhvae
  ch
  

  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  No sequence available.