Online resources of potential interest to SCOP users

• SCOP2 prototype of a new structural classification of proteins

• Structural alignments for proteins with non-trivial relationships (SISYPHUS)
• Hidden Markov Model library for SCOP superfamilies (SUPERFAMILY)

• Structural similarity search of older version of SCOP using SSM (now PDBeFold)
• Combinatorial Extension (CE) method for structural comparison
• PALI pairwise and multiple alignments of SCOP and SCOPe families
• PASS2 automated structural alignments of SCOP superfamilies
• SUPFAM structure/sequence relationships
• Stuctural alignment of SCOP sequences (database + server)

• Sequence similarity search of SCOP using FPS
• Universal Protein Resource (UniProt)
• Pfam database of protein families and HMMs
• Integrated resource for protein families (InterPro)

• CATH/Gene3D structural and evolutionary classification
• ECOD evolutionary classification of protein domains
• Dali structural comparison and FSSP structural classification
• 3Dee Protein Domain Definitions

• Protein Data Bank (PDB)
• Macromolecular Structure Database (EBI)
• Nucleic Acid Database (NDB)

• Swiss-Model
• Macromolecular Motions Database

• Genome Census
• Function assignment and metabolic models