PDB entry 1e6v

View 1e6v on RCSB PDB site
Description: Methyl-coenzyme M reductase from Methanopyrus kandleri
Class: oxidoreductase
Keywords: biological methanogenesis, ni-enzyme, oxidoreductase, ni enzyme
Deposited on 2000-08-23, released 2000-10-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: methyl-coenzyme m reductase I alpha subunit
    Species: Methanopyrus kandleri [TaxId:2320]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1e6va1, d1e6va2
  • Chain 'B':
    Compound: methyl-coenzyme m reductase I beta subunit
    Species: Methanopyrus kandleri [TaxId:2320]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q49601
      • cloning artifact (48)
      • cloning artifact (97)
      • cloning artifact (219)
    Domains in SCOPe 2.08: d1e6vb1, d1e6vb2
  • Chain 'C':
    Compound: methyl-coenzyme m reductase I gamma subunit
    Species: Methanopyrus kandleri [TaxId:2320]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1e6vc_
  • Chain 'D':
    Compound: methyl-coenzyme m reductase I alpha subunit
    Species: Methanopyrus kandleri [TaxId:2320]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1e6vd1, d1e6vd2
  • Chain 'E':
    Compound: methyl-coenzyme m reductase I beta subunit
    Species: Methanopyrus kandleri [TaxId:2320]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q49601
      • cloning artifact (48)
      • cloning artifact (97)
      • cloning artifact (219)
    Domains in SCOPe 2.08: d1e6ve1, d1e6ve2
  • Chain 'F':
    Compound: methyl-coenzyme m reductase I gamma subunit
    Species: Methanopyrus kandleri [TaxId:2320]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1e6vf_
  • Heterogens: F43, TP7, COM

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1e6vA (A:)
mssaeeklfmkalkekfeespeekytkfyifggwkqserkkefkewadkiveergvphyn
pdigvplgqrklmsyqvsgtdvfvegddltfvnnaamqqmwddirrtvivgmdtahrvle
rrlgkevtpetineymetlnhalpggavvqehmveihpgltwdcyakiitgdleladeid
dkflidieklfpeeqaeqlikaignrtyqvcrmptivghvcdgatmyrwaamqiamsfic
aykiaageaavsdfafaskhaevinmgemlparrargenepggvpfgvladcvqtmrkyp
ddpakvaleviaagamlydqiwlgsymsggvgftqyatavypdnilddyvyygleyvedk
ygiaeaepsmdvvkdvatevtlygleqyerypaamethfggsqraavcaaaagcstafat
ghaqaglngwylsqilhkegqgrlgfygyalqdqcgaanslsvrsdeglplelrgpnypn
yamnvghlgeyagivqaahaargdafcvhpvikvafadenlvfdfteprkefakgalref
epagerdlivpae

    Sequence, based on observed residues (ATOM records): (download) 
    >1e6vA (A:)
lfmkalkekfeespeekytkfyifggwkqserkkefkewadkiveergvphynpdigvpl
gqrklmsyqvsgtdvfvegddltfvnnaamqqmwddirrtvivgmdtahrvlerrlgkev
tpetineymetlnhalpggavvqehmveihpgltwdcyakiitgdleladeiddkflidi
eklfpeeqaeqlikaignrtyqvcrmptivghvcdgatmyrwaamqiamsficaykiaag
eaavsdfafaskhaevinmgemlparrargenepggvpfgvladcvqtmrkypddpakva
leviaagamlydqiwlgsymsggvgftqyatavypdnilddyvyygleyvedkygiaeae
psmdvvkdvatevtlygleqyerypaamethfggsqraavcaaaagcstafatghaqagl
ngwylsqilhkegqgrlgfygyalqdqcgaanslsvrsdeglplelrgpnypnyamnvgh
lgeyagivqaahaargdafcvhpvikvafadenlvfdfteprkefakgalrefepagerd
livpa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1e6vB (B:)
mareakdtvdlyddrgncvaeevpievlspmrneaiqsivndikrtvavdlegienalqn
atvggkgmkipgremdvdivdnaeaiadeiekmirvyqdddtnvepmydgkrllvqlpse
rvkvmadpysgtlqagmavvhaiidvcevdmwdanmvkaavfgrypqtidyfggnvasml
dvpmkqegvgyalrnimvnhivaatrkntmqavclaatlqqtamfemgdalgpferlhll
gyayqglnadnmvydivkkhgkegtvgtvvrevveraledgvievkeelpsfkvykandm
dlwnayaaaglvaavmvnqgaaraaqgvsatilyyndlleyetglpgvdfgraegtavgf
sffshsiyggggpgifhgnhivtrhskgfaippvaaamaldagtqmfspevtskligdvf
geidefrepmkyiteaaaeeakr

    Sequence, based on observed residues (ATOM records): (download) 
    >1e6vB (B:)
dtvdlyddrgncvaeevpievlspmrneaiqsivndikrtvavdlegienalqnatvggk
gmkipgremdvdivdnaeaiadeiekmirvyqdddtnvepmydgkrllvqlpservkvma
dpysgtlqagmavvhaiidvcevdmwdanmvkaavfgrypqtidyfggnvasmldvpmkq
egvgyalrnimvnhivaatrkntmqavclaatlqqtamfemgdalgpferlhllgyayqg
lnadnmvydivkkhgkegtvgtvvrevveraledgvievkeelpsfkvykandmdlwnay
aaaglvaavmvnqgaaraaqgvsatilyyndlleyetglpgvdfgraegtavgfsffshs
iyggggpgifhgnhivtrhskgfaippvaaamaldagtqmfspevtskligdvfgeidef
repmkyiteaaaeeak

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1e6vC (C:)
maekaqfyypgetdvaenrrkymnpnyelkklreipdedivrlmghrepgeeypsvhppl
eemeepecpirelveptegakagdriryiqftdsvyfapihpyirarmymwryrgvdtgs
lsgrqiievrerdlekiakelleteifdparsgvrgatvhghalrldenglmlhalrryr
lneetgeveyvkdqvgieldepipvgapadeddlkerttiyridgtpyredeellqvvqr
ihelrtlagyrpeeaegk

    Sequence, based on observed residues (ATOM records): (download) 
    >1e6vC (C:)
fyypgetdvaenrrkymnpnyelkklreipdedivrlmghrepgeeypsvhppleemeep
ecpirelveptegakagdriryiqftdsvyfapihpyirarmymwryrgvdtgslsgrqi
ievrerdlekiakelleteifdparsgvrgatvhghalrldenglmlhalrryrlneetg
eveyvkdqvgieldepipvgapadeddlkerttiyridgtpyredeellqvvqrihelrt
lagyrpee

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1e6vD (D:)
mssaeeklfmkalkekfeespeekytkfyifggwkqserkkefkewadkiveergvphyn
pdigvplgqrklmsyqvsgtdvfvegddltfvnnaamqqmwddirrtvivgmdtahrvle
rrlgkevtpetineymetlnhalpggavvqehmveihpgltwdcyakiitgdleladeid
dkflidieklfpeeqaeqlikaignrtyqvcrmptivghvcdgatmyrwaamqiamsfic
aykiaageaavsdfafaskhaevinmgemlparrargenepggvpfgvladcvqtmrkyp
ddpakvaleviaagamlydqiwlgsymsggvgftqyatavypdnilddyvyygleyvedk
ygiaeaepsmdvvkdvatevtlygleqyerypaamethfggsqraavcaaaagcstafat
ghaqaglngwylsqilhkegqgrlgfygyalqdqcgaanslsvrsdeglplelrgpnypn
yamnvghlgeyagivqaahaargdafcvhpvikvafadenlvfdfteprkefakgalref
epagerdlivpae

    Sequence, based on observed residues (ATOM records): (download) 
    >1e6vD (D:)
lfmkalkekfeespeekytkfyifggwkqserkkefkewadkiveergvphynpdigvpl
gqrklmsyqvsgtdvfvegddltfvnnaamqqmwddirrtvivgmdtahrvlerrlgkev
tpetineymetlnhalpggavvqehmveihpgltwdcyakiitgdleladeiddkflidi
eklfpeeqaeqlikaignrtyqvcrmptivghvcdgatmyrwaamqiamsficaykiaag
eaavsdfafaskhaevinmgemlparrargenepggvpfgvladcvqtmrkypddpakva
leviaagamlydqiwlgsymsggvgftqyatavypdnilddyvyygleyvedkygiaeae
psmdvvkdvatevtlygleqyerypaamethfggsqraavcaaaagcstafatghaqagl
ngwylsqilhkegqgrlgfygyalqdqcgaanslsvrsdeglplelrgpnypnyamnvgh
lgeyagivqaahaargdafcvhpvikvafadenlvfdfteprkefakgalrefepagerd
livpa

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1e6vE (E:)
mareakdtvdlyddrgncvaeevpievlspmrneaiqsivndikrtvavdlegienalqn
atvggkgmkipgremdvdivdnaeaiadeiekmirvyqdddtnvepmydgkrllvqlpse
rvkvmadpysgtlqagmavvhaiidvcevdmwdanmvkaavfgrypqtidyfggnvasml
dvpmkqegvgyalrnimvnhivaatrkntmqavclaatlqqtamfemgdalgpferlhll
gyayqglnadnmvydivkkhgkegtvgtvvrevveraledgvievkeelpsfkvykandm
dlwnayaaaglvaavmvnqgaaraaqgvsatilyyndlleyetglpgvdfgraegtavgf
sffshsiyggggpgifhgnhivtrhskgfaippvaaamaldagtqmfspevtskligdvf
geidefrepmkyiteaaaeeakr

    Sequence, based on observed residues (ATOM records): (download) 
    >1e6vE (E:)
dtvdlyddrgncvaeevpievlspmrneaiqsivndikrtvavdlegienalqnatvggk
gmkipgremdvdivdnaeaiadeiekmirvyqdddtnvepmydgkrllvqlpservkvma
dpysgtlqagmavvhaiidvcevdmwdanmvkaavfgrypqtidyfggnvasmldvpmkq
egvgyalrnimvnhivaatrkntmqavclaatlqqtamfemgdalgpferlhllgyayqg
lnadnmvydivkkhgkegtvgtvvrevveraledgvievkeelpsfkvykandmdlwnay
aaaglvaavmvnqgaaraaqgvsatilyyndlleyetglpgvdfgraegtavgfsffshs
iyggggpgifhgnhivtrhskgfaippvaaamaldagtqmfspevtskligdvfgeidef
repmkyiteaaaeeak

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1e6vF (F:)
maekaqfyypgetdvaenrrkymnpnyelkklreipdedivrlmghrepgeeypsvhppl
eemeepecpirelveptegakagdriryiqftdsvyfapihpyirarmymwryrgvdtgs
lsgrqiievrerdlekiakelleteifdparsgvrgatvhghalrldenglmlhalrryr
lneetgeveyvkdqvgieldepipvgapadeddlkerttiyridgtpyredeellqvvqr
ihelrtlagyrpeeaegk

    Sequence, based on observed residues (ATOM records): (download) 
    >1e6vF (F:)
fyypgetdvaenrrkymnpnyelkklreipdedivrlmghrepgeeypsvhppleemeep
ecpirelveptegakagdriryiqftdsvyfapihpyirarmymwryrgvdtgslsgrqi
ievrerdlekiakelleteifdparsgvrgatvhghalrldenglmlhalrryrlneetg
eveyvkdqvgieldepipvgapadeddlkerttiyridgtpyredeellqvvqrihelrt
lagyrpee