Class b: All beta proteins [48724] (144 folds) |
Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies |
Superfamily b.121.2: Group II dsDNA viruses VP [49749] (3 families) duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits trimeric; in the trimers, the domains are arranged around pseudo six-fold axis |
Family b.121.2.3: Major capsid protein vp54 [82013] (1 protein) |
Protein Major capsid protein vp54 [82014] (1 species) |
Species Paramecium bursaria chorella virus type 1, PBCV-1 [82015] (2 PDB entries) a large, lipid-containing, DNA virus |
Domain d1j5qa1: 1j5q A:25-221 [77084] |
Domain d1j5qa2: 1j5q A:222-437 [77085] |
Domain d1j5qb1: 1j5q B:25-221 [77086] |
Domain d1j5qb2: 1j5q B:222-437 [77087] |
Domain d1m3ya1: 1m3y A:25-221 [78579] |
Domain d1m3ya2: 1m3y A:222-437 [78580] |
Domain d1m3yb1: 1m3y B:25-221 [78581] |
Domain d1m3yb2: 1m3y B:222-437 [78582] |
Domain d1m3yc1: 1m3y C:25-221 [78583] |
Domain d1m3yc2: 1m3y C:222-437 [78584] |
Domain d1m3yd1: 1m3y D:25-221 [78585] |
Domain d1m3yd2: 1m3y D:222-437 [78586] |
Timeline for Species Paramecium bursaria chorella virus type 1, PBCV-1 from b.121.2.3 Major capsid protein vp54: