Lineage for Species: Paramecium bursaria chorella virus type 1, PBCV-1

  1. Root: SCOP 1.69
  2. 450777Class b: All beta proteins [48724] (144 folds)
  3. 472284Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 472306Superfamily b.121.2: Group II dsDNA viruses VP [49749] (3 families) (S)
    duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits
    trimeric; in the trimers, the domains are arranged around pseudo six-fold axis
  5. 472336Family b.121.2.3: Major capsid protein vp54 [82013] (1 protein)
  6. 472337Protein Major capsid protein vp54 [82014] (1 species)
  7. 472338Species Paramecium bursaria chorella virus type 1, PBCV-1 [82015] (2 PDB entries)
    a large, lipid-containing, DNA virus

PDB entries in Species: Paramecium bursaria chorella virus type 1, PBCV-1:

  1. Domain(s) for 1j5q:
    1. 472347Domain d1j5qa1: 1j5q A:25-221 [77084]
    2. 472348Domain d1j5qa2: 1j5q A:222-437 [77085]
    3. 472349Domain d1j5qb1: 1j5q B:25-221 [77086]
    4. 472350Domain d1j5qb2: 1j5q B:222-437 [77087]
  2. Domain(s) for 1m3y:
    1. 472339Domain d1m3ya1: 1m3y A:25-221 [78579]
    2. 472340Domain d1m3ya2: 1m3y A:222-437 [78580]
    3. 472341Domain d1m3yb1: 1m3y B:25-221 [78581]
    4. 472342Domain d1m3yb2: 1m3y B:222-437 [78582]
    5. 472343Domain d1m3yc1: 1m3y C:25-221 [78583]
    6. 472344Domain d1m3yc2: 1m3y C:222-437 [78584]
    7. 472345Domain d1m3yd1: 1m3y D:25-221 [78585]
    8. 472346Domain d1m3yd2: 1m3y D:222-437 [78586]

More info for Species Paramecium bursaria chorella virus type 1, PBCV-1 from b.121.2.3 Major capsid protein vp54

Timeline for Species Paramecium bursaria chorella virus type 1, PBCV-1 from b.121.2.3 Major capsid protein vp54: